View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17249_high_1 (Length: 488)

Name: NF17249_high_1
Description: NF17249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17249_high_1
NF17249_high_1
[»] chr8 (11 HSPs)
chr8 (83-411)||(9624198-9624544)
chr8 (224-373)||(22756346-22756498)
chr8 (248-372)||(54189-54315)
chr8 (215-373)||(16595076-16595236)
chr8 (224-373)||(15001484-15001636)
chr8 (215-343)||(29610981-29611112)
chr8 (224-300)||(7591382-7591459)
chr8 (224-373)||(10932754-10932905)
chr8 (224-300)||(30501238-30501315)
chr8 (224-373)||(35225680-35225832)
chr8 (224-300)||(41548711-41548788)
[»] chr7 (2 HSPs)
chr7 (215-373)||(21408539-21408699)
chr7 (224-300)||(1363733-1363810)
[»] chr5 (4 HSPs)
chr5 (215-373)||(4689615-4689776)
chr5 (215-373)||(27838991-27839151)
chr5 (218-278)||(14011173-14011233)
chr5 (221-300)||(26180217-26180297)
[»] chr3 (4 HSPs)
chr3 (224-364)||(19906790-19906933)
chr3 (224-300)||(41682967-41683044)
chr3 (224-300)||(3867563-3867640)
chr3 (224-300)||(50386370-50386447)
[»] chr1 (8 HSPs)
chr1 (218-373)||(26733582-26733740)
chr1 (224-300)||(42512765-42512842)
chr1 (215-283)||(47242502-47242571)
chr1 (218-270)||(7146892-7146945)
chr1 (224-300)||(7837235-7837312)
chr1 (215-300)||(31574456-31574541)
chr1 (248-373)||(17887975-17888102)
chr1 (248-373)||(41967869-41967996)
[»] chr4 (10 HSPs)
chr4 (331-373)||(40792438-40792480)
chr4 (224-300)||(26083435-26083512)
chr4 (224-300)||(50178405-50178482)
chr4 (224-300)||(50729455-50729532)
chr4 (218-278)||(9807273-9807334)
chr4 (224-300)||(11056138-11056215)
chr4 (232-300)||(20517943-20518012)
chr4 (232-300)||(36497313-36497382)
chr4 (224-300)||(44640419-44640496)
chr4 (320-364)||(7554969-7555013)
[»] scaffold0025 (1 HSPs)
scaffold0025 (224-300)||(5365-5442)
[»] chr2 (4 HSPs)
chr2 (215-278)||(83385-83449)
chr2 (224-293)||(6896268-6896338)
chr2 (215-364)||(44284656-44284808)
chr2 (215-278)||(38623215-38623279)
[»] chr6 (7 HSPs)
chr6 (226-300)||(9614067-9614142)
chr6 (224-343)||(18597117-18597239)
chr6 (320-373)||(7396183-7396236)
chr6 (224-300)||(10485250-10485327)
chr6 (218-262)||(14925170-14925215)
chr6 (218-278)||(14925409-14925470)
chr6 (221-300)||(35004084-35004164)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 83 - 411
Target Start/End: Complemental strand, 9624544 - 9624198
Alignment:
Q  83 cggtctaactctatatcatgttaaaaagcacgattga----------aagaaaacaaattgagagaaagatgaattatttgagataagtcaaat------ 166  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||| ||||||||||||||||||          
T  9624544 cggtctaactctatatcatgttaaaaagcacgattgagcccaactaaaagaaaacaaattgagagaaagatgaatcatttgagataagtcaaatgaaaaa 9624445  T
Q  167 -atgatacaattaggtgcgtttgatctgctnnnnnnntgaagaacatggcatgacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctg 265  Q
     |||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9624444 tatgatacaattaggtgcgtttgatctgctaaaaaaatgaagaacatgacatgacatgacaacttcagttgtacactgtttatttgtaaaattgtttctg 9624345  T
Q  266 ggacaagacaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaat 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9624344 ggacaagacaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccacaacacaactttttgtttcatgcacaagttatctaaat 9624245  T
Q  366 tacaa-aaaattgtataagacnnnnnnnttattcaataccataaaaa 411  Q
    ||||| |||||||||||||||       |||||||||||||||||||    
T  9624244 tacaaaaaaattgtataagacaaaaaaattattcaataccataaaaa 9624198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 373
Target Start/End: Original strand, 22756346 - 22756498
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgc 320  Q
    |||||| ||||| |||| |||||| ||||||||| ||||||||||| | ||||||   ||| ||||||||| ||||||  ||||||||||   ||||       
T  22756346 acaactccagttatacaatgtttgatttgtaaaactgtttctgggataggacaaatttgaggcaagagacaagacaaaaacataaatttttatccctcat 22756445  T
Q  321 taaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 373  Q
    || |||| ||||||||||||||| ||| | |||||||||||||| ||||||||    
T  22756446 tataccacaacacaactttttgtatcacgtacaagttatctaaaatacaaaaa 22756498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 372
Target Start/End: Complemental strand, 54315 - 54189
Alignment:
Q  248 tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgctaaaccataacacaactttttgttt 345  Q
    ||||||||| |||||||| |||| ||||| | ||| ||||| |||||||||||  |||||||||| | || ||||||||||| | |||||||||||||      
T  54315 tttgtaaaactgtttctgagacatgacaatccggacacaagggacatgacaaaaacataaatttttgtcctttgctaaaccacatcacaactttttgtcc 54216  T
Q  346 catgcacaagttatctaaattacaaaa 372  Q
    ||   |||||||||| ||| |||||||    
T  54215 cacatacaagttatcgaaaatacaaaa 54189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 373
Target Start/End: Original strand, 16595076 - 16595236
Alignment:
Q  215 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttc 311  Q
    ||||||| ||||||  |||||||| | |||||| |||||||| ||||||||||||||  |||||| | || |||| |||| ||||||  ||| || |||     
T  16595076 catgacaggacaacaccagttgtatattgtttgatttgtaaa-ttgtttctgggacagaacaaactgtaggcaagggacaggacaaaaacatgaagtttt 16595174  T
Q  312 gacccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 373  Q
    | |||| ||||| ||| |||||||||||||||  || | |||||||||||||| ||||||||    
T  16595175 gtccctcgctaatccacaacacaactttttgtcccacgtacaagttatctaaaatacaaaaa 16595236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 373
Target Start/End: Complemental strand, 15001636 - 15001484
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgac--aaacataaattttcgacccttgc 320  Q
    |||||||||||||| || |||||| ||||||||| |||||| |||||| ||||||| |||| ||| |||||  ||  ||||  ||||||| | ||||  |    
T  15001636 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaggacaaactggaggcaatagacagaacaaaaactgaaatttttgtccctcac 15001537  T
Q  321 taaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 373  Q
     |||||| |||||||||||||||  || | |||||||||||||| ||| ||||    
T  15001536 caaaccacaacacaactttttgtcccacgtacaagttatctaaaataccaaaa 15001484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 29610981 - 29611112
Alignment:
Q  215 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttc 311  Q
    |||||||  |||||||||||||| || |||||| ||||||||| |||||| ||||||  |||||| |||| |||| |||| |||||| |   |||||||     
T  29610981 catgacagaacaacttcagttgtccaatgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacaggacaaaaactgaaattttt 29611080  T
Q  312 gacccttgctaaaccataacacaactttttgt 343  Q
    | |||| || |||||| |||||||||||||||    
T  29611081 gtccctcgccaaaccacaacacaactttttgt 29611112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 7591382 - 7591459
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  7591382 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 7591459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 373
Target Start/End: Complemental strand, 10932905 - 10932754
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaaca-taaattttcgacccttgct 321  Q
    |||||||||||||||   |||||| ||| ||||||||||| ||||||||||||||   ||| |||||||||||| ||| | |||| ||| | ||||  ||    
T  10932905 acaacttcagttgtatggtgtttgatttataaaattgtttatgggacaagacaaagtagaggcaagagacatgataaaaactaaaattttgtccctcact 10932806  T
Q  322 aaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 373  Q
    |||||| | |||||||||| ||| || | |||| || |||||| ||| ||||    
T  10932805 aaaccacatcacaacttttagttccacgtacaatttgtctaaaataccaaaa 10932754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 30501315 - 30501238
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||  || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||    
T  30501315 acaacttcagttgcccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaa 30501238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 373
Target Start/End: Complemental strand, 35225832 - 35225680
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacata--aattttcgacccttgc 320  Q
    |||||| ||||||| || |||||| |||||||||  ||||| |||||| ||||||| |||| |||| |||| |||||| |    |||||| | |||| ||    
T  35225832 acaactccagttgtccagtgtttggtttgtaaaacagtttcagggacaggacaaactggaggcaagggacaggacaaaaactgcaatttttgtccctcgc 35225733  T
Q  321 taaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 373  Q
     |||||| | |||||||||||||  || | ||||||| |||||| ||||||||    
T  35225732 caaaccacatcacaactttttgtcacaagtacaagttgtctaaaatacaaaaa 35225680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 41548788 - 41548711
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||| || |||||| ||||||||| |||||| |  ||| ||||||| |||| ||||||||| ||||||    
T  41548788 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagatacatgacaaactggaggcaagagacaggacaaa 41548711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 215 - 373
Target Start/End: Original strand, 21408539 - 21408699
Alignment:
Q  215 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacataaatt-ttcg 312  Q
    |||||||||||| ||  ||||||||| | |||| ||||||||  ||||| |||||||| |||||| |||| |||| ||||||||||| | |||   || |    
T  21408539 catgacatgacatctctagttgtacaatatttgatttgtaaagctgtttttgggacaacacaaactggaggcaagggacatgacaaagacaaaacatttg 21408638  T
Q  313 acccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 373  Q
     ||||   ||||||| |||| |||||||| ||||||| |||||||||||||| ||||||||    
T  21408639 tccctcattaaaccacaacataactttttatttcatgtacaagttatctaaaatacaaaaa 21408699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 1363810 - 1363733
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||| || |||||| ||||||||||||||||  | ||| ||||||| |||| |||| |||||||||||    
T  1363810 acaacttcagttgtccagtgtttgatttgtaaaattgtttcatgtacaggacaaactggaggcaagggacatgacaaa 1363733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 373
Target Start/End: Original strand, 4689615 - 4689776
Alignment:
Q  215 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttc 311  Q
    |||||||  |||||||||||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||  || | |||||     
T  4689615 catgacagaacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaaaacacatattttt 4689714  T
Q  312 gacccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 373  Q
    | ||||  | |||||| |||||||||||||||  || | |||||||  ||||| ||||||||    
T  4689715 gtccctcaccaaaccacaacacaactttttgtcccacgtacaagttgcctaaaatacaaaaa 4689776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 373
Target Start/End: Original strand, 27838991 - 27839151
Alignment:
Q  215 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa-cataaattttcg 312  Q
    |||||||  |||||| ||||||| || |||||| ||||||||| |||||| || ||| ||||||| | || |||  |||| || ||| |||||||||| |    
T  27838991 catgacagaacaactccagttgtccagtgtttgatttgtaaaactgtttcaggtacatgacaaactgaaggcaatggacaggataaaacataaatttttg 27839090  T
Q  313 acccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 373  Q
     ||||  | ||||||||| |||||||||||| ||||| ||||||| |||||| ||| ||||    
T  27839091 tccctcaccaaaccataaaacaactttttgtctcatgtacaagttgtctaaaataccaaaa 27839151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 14011173 - 14011233
Alignment:
Q  218 gacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctgggacaagacaaac 278  Q
    |||| |||||||||||||||||  |||||| |||| |||||||||  |||||| |||||||    
T  14011173 gacaggacaacttcagttgtactatgtttgattgtgaaattgttttagggacatgacaaac 14011233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 26180217 - 26180297
Alignment:
Q  221 atgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    ||||||||||||||| |||| | |||| ||||||||| ||||| ||||||| || |||  |||||||| ||| ||||||||    
T  26180217 atgacaacttcagttatacaatatttgatttgtaaaactgtttttgggacatgataaattggagacaaaagatatgacaaa 26180297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 364
Target Start/End: Complemental strand, 19906933 - 19906790
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttcgacccttgc 320  Q
    |||||||||||||| || |||||| |||||||||||||||| ||||||  |||||| |||| |||| |||| |||||| |   ||||||| | ||||  |    
T  19906933 acaacttcagttgtccagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacaggacaaaaactgaaatttttgtccctcac 19906834  T
Q  321 taaaccataacacaactttttgtttcatgcacaagttatctaaa 364  Q
     |||||| | ||||||||||||| ||| | ||||||| ||||||    
T  19906833 caaaccacagcacaactttttgtctcacgtacaagttgtctaaa 19906790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 41682967 - 41683044
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  41682967 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaagacaaa 41683044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 3867563 - 3867640
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||| ||||||| |  |||||| ||||||||| |||||| ||||||  ||| || |||||||||||||||||||||    
T  3867563 acaactccagttgtccggtgtttgatttgtaaaactgtttcagggacagaacatactggagacaagagacatgacaaa 3867640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 50386370 - 50386447
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||| |||||||  | |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||||||||||    
T  50386370 acaactccagttgtctagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacatgacaaa 50386447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 373
Target Start/End: Complemental strand, 26733740 - 26733582
Alignment:
Q  218 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttcgac 314  Q
    ||||||||||||||||||||||  |||||| ||||||||| ||||| | ||||  |||||||  ||||| |  ||||||||||| |   ||||| | | |    
T  26733740 gacatgacaacttcagttgtacgatgtttgatttgtaaaactgtttttaggaccggacaaactagagacgatggacatgacaaaaactgaaattcttgtc 26733641  T
Q  315 ccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 373  Q
    ||   |||||||||||||||||||||||  ||||| ||||||| |||||| ||| ||||    
T  26733640 ccccactaaaccataacacaactttttgcctcatgtacaagttgtctaaaataccaaaa 26733582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 42512765 - 42512842
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  42512765 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 42512842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 47242502 - 47242571
Alignment:
Q  215 catgacatgacaacttcagttgtacactgttt-gtttgtaaaattgtttctgggacaagacaaacgggag 283  Q
    ||||||||||||||||||||||||   |||||  ||||||||||||||| ||||||| ||||||| ||||    
T  47242502 catgacatgacaacttcagttgtatggtgtttaatttgtaaaattgtttatgggacatgacaaactggag 47242571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 7146945 - 7146892
Alignment:
Q  218 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggaca 270  Q
    ||||| ||||||||||||||| | |||||| ||||||||||||||| |||||||    
T  7146945 gacataacaacttcagttgtatagtgtttgatttgtaaaattgtttttgggaca 7146892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 7837312 - 7837235
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| |||||||  ||| |||| |||||||||||    
T  7837312 acaacttcagttgttcagtgtttgatttgtaaaactgtttcaggaacatgacaaactagaggcaagggacatgacaaa 7837235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 31574541 - 31574456
Alignment:
Q  215 catgacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||||||||||||||| | ||  ||||||||| | ||||    |||| |||||| ||||| |||| ||||||||||    
T  31574541 catgacatgacaacttcagttgtacaattttgatttgtaaaactatttcaaaaacaaaacaaactggagataagaaacatgacaaa 31574456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 373
Target Start/End: Complemental strand, 17888102 - 17887975
Alignment:
Q  248 tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttcgacccttgctaaaccataacacaactttttgttt 345  Q
    ||||||||| |||||| || ||||||||||| |||| |||| |||| |||||| |   | ||||| | |||| || |||||| |||||||||||||||      
T  17888102 tttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaaaactcatatttttgtccctcgccaaaccacaacacaactttttgtcc 17888003  T
Q  346 catgcacaagttatctaaattacaaaaa 373  Q
    || | ||||||| |||||| ||| ||||    
T  17888002 cacgtacaagttgtctaaaataccaaaa 17887975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 373
Target Start/End: Original strand, 41967869 - 41967996
Alignment:
Q  248 tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttcgacccttgctaaaccataacacaactttttgttt 345  Q
    ||||||||| |||||| || ||| |||||||  ||| ||||||||| |||||| |   | ||||| | ||||| | |||||| ||||||||||||||| |    
T  41967869 tttgtaaaactgtttcaggtacaggacaaactagaggcaagagacaagacaaaaactcatatttttgtcccttaccaaaccacaacacaactttttgtct 41967968  T
Q  346 catgcacaagttatctaaattacaaaaa 373  Q
    || | ||||||| |||||| ||| ||||    
T  41967969 cacgtacaagttgtctaaaataccaaaa 41967996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 373
Target Start/End: Complemental strand, 40792480 - 40792438
Alignment:
Q  331 cacaactttttgtttcatgcacaagttatctaaattacaaaaa 373  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  40792480 cacaactttttgtttcatgtacaagttatctaaaatacaaaaa 40792438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 26083512 - 26083435
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    ||||||||||||||  | |||||| |||||||||||||||| ||||||  |||||| |||| |||| |||||||||||    
T  26083512 acaacttcagttgtttagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacatgacaaa 26083435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 50178405 - 50178482
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  50178405 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 50178482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 50729455 - 50729532
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||| || |||||| ||||||||| |||||| ||||||  |||||| |||| |||| |||||||||||    
T  50729455 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacatgacaaa 50729532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 9807334 - 9807273
Alignment:
Q  218 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 278  Q
    |||| ||||||||||||||| || |||||| ||||||||| |||||| || |||||||||||    
T  9807334 gacaggacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaac 9807273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 11056215 - 11056138
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| |||| |||| ||||||    
T  11056215 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaagacaaa 11056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 20517943 - 20518012
Alignment:
Q  232 agttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||| || |||||| ||||||||| |||||| || ||||||||||| |||| ||||||||| ||||||    
T  20517943 agttgttcagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagagacaggacaaa 20518012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 36497382 - 36497313
Alignment:
Q  232 agttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||| || |||||| ||||||||| |||||| || ||| ||||||| |||||||||||||| ||||||    
T  36497382 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggagacaagagacaggacaaa 36497313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 44640496 - 44640419
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    ||||||||||||||||| |||||| ||||||||| ||||| ||| | | |||||||  ||| ||||||||| ||||||    
T  44640496 acaacttcagttgtacagtgtttgatttgtaaaactgtttatggaaaatgacaaactagaggcaagagacaagacaaa 44640419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 7554969 - 7555013
Alignment:
Q  320 ctaaaccataacacaactttttgtttcatgcacaagttatctaaa 364  Q
    |||||||||||||||||||||||| ||| | ||||||| ||||||    
T  7554969 ctaaaccataacacaactttttgtctcacgtacaagttgtctaaa 7555013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 5365 - 5442
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||    
T  5365 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaa 5442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 83449 - 83385
Alignment:
Q  215 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 278  Q
    ||||||| |||||||||||||| ||| |||||| ||||||||| ||||| ||||||| |||||||    
T  83449 catgacaagacaacttcagttgcacagtgtttgatttgtaaaactgtttgtgggacatgacaaac 83385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 6896338 - 6896268
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagaca 293  Q
    |||||||||||||| || |||||| ||||||||| |||||| ||||||| |||||| |||| |||| ||||    
T  6896338 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaaaacaaactggaggcaagggaca 6896268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 364
Target Start/End: Complemental strand, 44284808 - 44284656
Alignment:
Q  215 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttc 311  Q
    |||||||  ||||||  |||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| |||||| |   | |||||     
T  44284808 catgacagaacaactagagttgttcagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaagacaaaaactcatattttt 44284709  T
Q  312 gacccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaa 364  Q
    | ||||  |||||||| | ||||||||||||| ||| | ||||||| ||||||    
T  44284708 gtccctcactaaaccacagcacaactttttgtctcacgtacaagttgtctaaa 44284656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 38623215 - 38623279
Alignment:
Q  215 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 278  Q
    |||||||| |||||||||||| | || |||||| ||||||||| |||||| |||||| |||||||    
T  38623215 catgacataacaacttcagttatccaatgtttgatttgtaaaactgtttcagggacaggacaaac 38623279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 9614142 - 9614067
Alignment:
Q  226 aacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    ||||||||||||||| |||||| ||||||||| ||||||  ||||| || |||| |||| |||| |||||||||||    
T  9614142 aacttcagttgtacaatgtttgatttgtaaaactgtttcaaggacaggataaactggaggcaagggacatgacaaa 9614067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 343
Target Start/End: Original strand, 18597117 - 18597239
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgc 320  Q
    |||| ||||||||| || |||||| ||||||||| |||||| |||| | ||||||| |||| |||| |||||||||||  |  ||||||| | ||||  |    
T  18597117 acaatttcagttgttcagtgtttgatttgtaaaactgtttcagggatatgacaaaccggaggcaagggacatgacaaaatctgaaatttttgtccctcac 18597216  T
Q  321 taaaccataacacaactttttgt 343  Q
     |||||| |||||||||||||||    
T  18597217 caaaccacaacacaactttttgt 18597239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 7396183 - 7396236
Alignment:
Q  320 ctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 373  Q
    ||||||||  |||||||||||||| ||| | |||||||||||||| ||||||||    
T  7396183 ctaaaccactacacaactttttgtctcacgtacaagttatctaaaatacaaaaa 7396236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 10485327 - 10485250
Alignment:
Q  224 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    |||||| ||||||| || |||||| ||||||||||| |||| || ||| ||||||| |||| ||||||||| ||||||    
T  10485327 acaactccagttgtccagtgtttgatttgtaaaattatttcaggtacaggacaaactggaggcaagagacaggacaaa 10485250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 14925170 - 14925215
Alignment:
Q  218 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgttt 262  Q
    |||||||||||||||||||| || |||||| |||||||||||||||    
T  14925170 gacatgacaacttcagttgtccagtgtttgatttgtaaaattgttt 14925215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 14925409 - 14925470
Alignment:
Q  218 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 278  Q
    |||||||||||||||||||| || |||||| ||||||||| |||||| || ||| |||||||    
T  14925409 gacatgacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaac 14925470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 35004084 - 35004164
Alignment:
Q  221 atgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 300  Q
    ||||||||| ||||||| |  |||||| |||||||||  |||| | |||||||| |||| |||||||||||||| ||||||    
T  35004084 atgacaactccagttgtgcggtgtttgatttgtaaaacggtttataggacaagataaaccggagacaagagacaagacaaa 35004164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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