View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17249_high_2 (Length: 226)

Name: NF17249_high_2
Description: NF17249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17249_high_2
NF17249_high_2
[»] chr7 (19 HSPs)
chr7 (1-211)||(22111085-22111295)
chr7 (1-211)||(40583294-40583504)
chr7 (3-48)||(42617822-42617867)
chr7 (1-48)||(18206238-18206284)
chr7 (1-48)||(19932974-19933020)
chr7 (1-48)||(35181341-35181387)
chr7 (1-48)||(3157585-3157631)
chr7 (1-48)||(21654040-21654086)
chr7 (1-48)||(43107824-43107870)
chr7 (1-48)||(23106602-23106648)
chr7 (1-48)||(29235988-29236034)
chr7 (1-44)||(32491030-32491072)
chr7 (1-48)||(35084019-35084066)
chr7 (1-48)||(41889320-41889366)
chr7 (1-48)||(47383555-47383601)
chr7 (1-48)||(48879537-48879583)
chr7 (3-48)||(40560533-40560577)
chr7 (1-48)||(41890163-41890208)
chr7 (1-52)||(45599054-45599106)
[»] chr8 (17 HSPs)
chr8 (1-52)||(44411167-44411217)
chr8 (1-48)||(27621283-27621329)
chr8 (1-48)||(32678479-32678526)
chr8 (1-48)||(35260210-35260256)
chr8 (1-46)||(35344520-35344565)
chr8 (3-48)||(37566459-37566503)
chr8 (1-48)||(3100106-3100152)
chr8 (1-48)||(11044210-11044256)
chr8 (5-48)||(25321548-25321590)
chr8 (1-48)||(27752739-27752785)
chr8 (1-48)||(11992881-11992927)
chr8 (1-48)||(37598222-37598268)
chr8 (1-48)||(39187383-39187429)
chr8 (1-44)||(44052774-44052816)
chr8 (1-48)||(31132993-31133037)
chr8 (1-42)||(24612445-24612488)
chr8 (1-52)||(35346263-35346312)
[»] chr4 (19 HSPs)
chr4 (1-48)||(30777634-30777681)
chr4 (1-48)||(29180339-29180385)
chr4 (1-48)||(43980645-43980691)
chr4 (1-48)||(50768592-50768638)
chr4 (1-48)||(47807342-47807387)
chr4 (1-48)||(3043094-3043140)
chr4 (1-48)||(10591430-10591476)
chr4 (1-48)||(28681806-28681852)
chr4 (1-48)||(30776411-30776457)
chr4 (1-48)||(38187655-38187701)
chr4 (1-48)||(39969916-39969962)
chr4 (1-46)||(9798004-9798048)
chr4 (1-42)||(49902174-49902214)
chr4 (2-42)||(1620177-1620217)
chr4 (1-48)||(29899862-29899908)
chr4 (1-40)||(32012261-32012300)
chr4 (1-48)||(53677406-53677452)
chr4 (1-48)||(55937630-55937676)
chr4 (1-48)||(51495296-51495341)
[»] chr1 (23 HSPs)
chr1 (1-48)||(18913308-18913355)
chr1 (1-48)||(23873791-23873837)
chr1 (1-48)||(26907055-26907101)
chr1 (1-52)||(31970269-31970319)
chr1 (1-48)||(35941991-35942037)
chr1 (1-48)||(39026209-39026256)
chr1 (1-52)||(40960434-40960484)
chr1 (1-48)||(18852373-18852419)
chr1 (1-48)||(35189352-35189398)
chr1 (1-48)||(44875329-44875375)
chr1 (1-48)||(46949471-46949517)
chr1 (1-54)||(45357833-45357887)
chr1 (3-48)||(26479891-26479936)
chr1 (1-45)||(28017806-28017849)
chr1 (1-48)||(15311327-15311373)
chr1 (1-48)||(29488898-29488944)
chr1 (1-48)||(36037387-36037433)
chr1 (1-48)||(38942404-38942451)
chr1 (1-48)||(40220209-40220255)
chr1 (1-44)||(40935581-40935623)
chr1 (1-48)||(43656001-43656047)
chr1 (1-48)||(49924569-49924615)
chr1 (1-48)||(28916480-28916525)
[»] scaffold0495 (1 HSPs)
scaffold0495 (1-48)||(4780-4826)
[»] chr6 (8 HSPs)
chr6 (1-48)||(5121417-5121463)
chr6 (1-48)||(10228062-10228108)
chr6 (1-48)||(17721770-17721816)
chr6 (3-48)||(374251-374295)
chr6 (3-48)||(17599464-17599508)
chr6 (1-46)||(30766596-30766640)
chr6 (3-44)||(30949287-30949327)
chr6 (3-48)||(31887081-31887126)
[»] chr5 (12 HSPs)
chr5 (1-48)||(35462680-35462726)
chr5 (1-48)||(8145974-8146020)
chr5 (1-48)||(8541525-8541571)
chr5 (1-48)||(30086507-30086554)
chr5 (1-48)||(31316762-31316808)
chr5 (1-52)||(31690577-31690627)
chr5 (1-48)||(12639041-12639086)
chr5 (1-48)||(16286044-16286090)
chr5 (1-48)||(25962409-25962455)
chr5 (1-48)||(36413897-36413943)
chr5 (1-42)||(20915011-20915051)
chr5 (3-48)||(24439726-24439770)
[»] chr3 (15 HSPs)
chr3 (1-48)||(21654396-21654442)
chr3 (1-48)||(26641035-26641081)
chr3 (1-48)||(32322162-32322208)
chr3 (1-48)||(53020334-53020380)
chr3 (1-48)||(55400889-55400935)
chr3 (1-46)||(34022750-34022794)
chr3 (1-49)||(46580686-46580733)
chr3 (1-48)||(16739088-16739134)
chr3 (1-48)||(37324006-37324052)
chr3 (1-52)||(51309564-51309615)
chr3 (1-41)||(31126363-31126402)
chr3 (1-48)||(13541384-13541430)
chr3 (1-48)||(23514592-23514639)
chr3 (1-48)||(46295999-46296045)
chr3 (3-48)||(51426772-51426816)
[»] chr2 (20 HSPs)
chr2 (1-48)||(792316-792362)
chr2 (1-48)||(21539907-21539953)
chr2 (1-48)||(33635486-33635532)
chr2 (1-48)||(38071410-38071456)
chr2 (1-48)||(10478328-10478374)
chr2 (1-48)||(10979319-10979365)
chr2 (1-48)||(14565333-14565379)
chr2 (1-48)||(15858649-15858695)
chr2 (1-48)||(29513980-29514026)
chr2 (1-44)||(35832562-35832604)
chr2 (1-48)||(43075899-43075945)
chr2 (1-42)||(38549609-38549649)
chr2 (1-48)||(4092161-4092207)
chr2 (1-48)||(18833869-18833916)
chr2 (1-48)||(28424423-28424469)
chr2 (1-48)||(43451655-43451701)
chr2 (1-48)||(44804048-44804094)
chr2 (3-48)||(29514435-29514479)
chr2 (1-41)||(5091507-5091546)
chr2 (1-41)||(8784545-8784585)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 22111295 - 22111085
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacggaaggatttgatgacaataaaacaggatctacttgtagaaacaaaatacagtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22111295 tcttaataagtgtgaattagtgttattttgcttataaattaggacggaaggatttgatgacaataaaacaggatctacttgtagaaacaaaatacagtag 22111196  T
Q  101 ggtcctataacggttgaacagcttgattcaagaaagttggtaccagacactagtaatacctaagaataataacatcatccaataaaaataaagagtacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22111195 ggtcctataacggttgaacagcttgattcaagaaagttggtaccagacactagtaatacctaagaataataacaacatccaataaaaataaagagtacaa 22111096  T
Q  201 tgaaacaacat 211  Q
    |||||||||||    
T  22111095 tgaaacaacat 22111085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 40583294 - 40583504
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacggaaggatttgatgacaataaaacaggatctacttgtagaaacaaaatacagtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40583294 tcttaataagtgtgaattagtgttattttgcttataaattaggacggaaggatttgatgacaataaaacaggatctacttgtagaaacaaaatacagtag 40583393  T
Q  101 ggtcctataacggttgaacagcttgattcaagaaagttggtaccagacactagtaatacctaagaataataacatcatccaataaaaataaagagtacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40583394 ggtcctataacggttgaacagcttgattcaagaaagttggtaccagacactagtaatacctaagaataataacaacatccaataaaaataaagagtacaa 40583493  T
Q  201 tgaaacaacat 211  Q
    |||||||||||    
T  40583494 tgaaacaacat 40583504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 42617822 - 42617867
Alignment:
Q  3 ttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  42617822 ttaataagtgtgaattagtgtttttttgcttataaattaggacgga 42617867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18206284 - 18206238
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  18206284 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 18206238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19933020 - 19932974
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  19933020 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 19932974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35181341 - 35181387
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  35181341 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 35181387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3157585 - 3157631
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  3157585 tcttaataagtatgaattagtgtt-ttttgcttataaattaggacgga 3157631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21654086 - 21654040
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  21654086 tcttaataagtgtgaattagtgtt-ttttgcttataaattagaacgga 21654040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43107870 - 43107824
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  43107870 tcttaataaatgtgaattagtgtt-ttttgcttataaattaggacgga 43107824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23106602 - 23106648
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||||| || |||||||||||||||| ||||||    
T  23106602 tcttaataagtgtgaattagtatt-ttttgcttataaattaagacgga 23106648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29236034 - 29235988
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  29236034 tcttaatgagtgtgaatttgtgtt-ttttgcttataaattaggacgga 29235988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32491072 - 32491030
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattagga 44  Q
    ||||||||| |||||||||||||| |||||||||||||||||||    
T  32491072 tcttaataaatgtgaattagtgtt-ttttgcttataaattagga 32491030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35084066 - 35084019
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||| |||||||||||| ||||| ||||||||||||||| |||||||    
T  35084066 tcttattaagtgtgaatttgtgtttttttgcttataaattgggacgga 35084019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41889320 - 41889366
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  41889320 tcttaataagtgtgaattaatgtt-ttttgcttataaattagaacgga 41889366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47383555 - 47383601
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  47383555 tcttaatatgtgtgaatttgtgtt-ttttgcttataaattaggacgga 47383601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 48879537 - 48879583
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  48879537 tcttaataagtgtaaattagtgtt-ttttgcttataaattagaacgga 48879583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 40560533 - 40560577
Alignment:
Q  3 ttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||    
T  40560533 ttaataagtgtaaattaatgtt-ttttgcttataaattaggacgga 40560577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41890208 - 41890163
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||| |||||||||||  |||| ||||||||||||||||||    
T  41890208 tcttaataagtttgaattagtgt--tttttcttataaattaggacgga 41890163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 45599054 - 45599106
Alignment:
Q  1 tcttaataagtgtgaattagtgttatttt-gcttataaattaggacggaagga 52  Q
    |||||||||||| |||||| |||| |||| | |||||||||||||||||||||    
T  45599054 tcttaataagtgcgaattactgttttttttgtttataaattaggacggaagga 45599106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44411217 - 44411167
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacggaagga 52  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44411217 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacggaagga 44411167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27621283 - 27621329
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  27621283 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 27621329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32678526 - 32678479
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  32678526 tcttaataagtgtgaattaatgtttttttgcttataaattaggacgga 32678479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35260210 - 35260256
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  35260210 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 35260256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35344520 - 35344565
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacg 46  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  35344520 tcttaataagtgtgaattagagtttttttgcttataaattaggacg 35344565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 37566503 - 37566459
Alignment:
Q  3 ttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  37566503 ttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 37566459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3100106 - 3100152
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||    
T  3100106 tcttaataagtgtgaattagtgtt-ttttgcttataaattaagacgga 3100152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11044210 - 11044256
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  11044210 tcttaataagtgtgaattagtgtt-ttttgcttataaattagaacgga 11044256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 25321590 - 25321548
Alignment:
Q  5 aataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  25321590 aataagtgtgaattagtgtt-ttttgcttataaattaggacgga 25321548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27752739 - 27752785
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||    
T  27752739 tcttaataagtgtgaattagtgtt-ttttgcttataaatcaggacgga 27752785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11992881 - 11992927
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||||||    
T  11992881 tcttaattagtgtgaattagtgtt-ttttacttataaattaggacgga 11992927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37598222 - 37598268
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||||    
T  37598222 tcttaataaccgtgaattagtgtt-ttttgcttataaattaggacgga 37598268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39187383 - 39187429
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||||    
T  39187383 tcttaataagcgtgaattagtgtt-ttttgcttataaattatgacgga 39187429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44052774 - 44052816
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattagga 44  Q
    ||||||||||||||||||||| || |||||||||||||||||||    
T  44052774 tcttaataagtgtgaattagtatt-ttttgcttataaattagga 44052816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31133037 - 31132993
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||||| ||   |||||||||||||||||||||    
T  31133037 tcttaataagtgtgaattagtttt---ttgcttataaattaggacgga 31132993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24612488 - 24612445
Alignment:
Q  1 tcttaataagtgtgaattagtg--ttattttgcttataaattag 42  Q
    ||||||||||||||||||||||  || |||||||||||||||||    
T  24612488 tcttaataagtgtgaattagtgtttttttttgcttataaattag 24612445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35346312 - 35346263
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacggaagga 52  Q
    ||||||||| |||||||||| ||| |||  ||||||||||||||||||||||    
T  35346312 tcttaataaatgtgaattagagtttttt--cttataaattaggacggaagga 35346263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30777634 - 30777681
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  30777634 tcttaataagtgtgaattagtgtttttttgcttataaattaggacgga 30777681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29180385 - 29180339
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  29180385 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 29180339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 43980645 - 43980691
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  43980645 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 43980691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 50768592 - 50768638
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  50768592 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 50768638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47807342 - 47807387
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||    
T  47807342 tcttaataagtgtgaattagtgt--ttttgcttataaattaggacgga 47807387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3043140 - 3043094
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  3043140 tcttaataagtgtgaattagtgtt-ttttacttataaattaggacgga 3043094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10591476 - 10591430
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  10591476 tcttaataagtgtgaattactgtt-ttttgcttataaattaggacgga 10591430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28681806 - 28681852
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||    
T  28681806 tcttaataagtgtgaattagtatt-ttttgcttataaattaggacgga 28681852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30776457 - 30776411
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||    
T  30776457 tcttaataagtgtgaattagtttt-ttttgcttataaattaggacgga 30776411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38187701 - 38187655
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  38187701 tcttaataagtgtgaattagtgtt-tttagcttataaattaggacgga 38187655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39969962 - 39969916
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  39969962 tcttaataagtgtgaattactgtt-ttttgcttataaattaggacgga 39969916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9798048 - 9798004
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacg 46  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||    
T  9798048 tcttaataaatgtgaattagtgtt-ttttgcttataaattaggacg 9798004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49902174 - 49902214
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattag 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  49902174 tcttaataagtgtgaattagtgtt-ttttgcttataaattag 49902214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 1620177 - 1620217
Alignment:
Q  2 cttaataagtgtgaattagtgttattttgcttataaattag 42  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  1620177 cttaataagtgtgaattagtgtttttttgtttataaattag 1620217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29899862 - 29899908
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||||||    
T  29899862 tcttaataaatgtgaattagtgtt-ttttacttataaattaggacgga 29899908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32012300 - 32012261
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaatt 40  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  32012300 tcttaataagtgtgaattaatgtttttttgcttataaatt 32012261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 53677452 - 53677406
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||    
T  53677452 tcttaataagtgtgaattaatgtt-ttttacttataaattaggacgga 53677406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 55937676 - 55937630
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  55937676 tcttaataagtatgaattagtgtt-ttttacttataaattaggacgga 55937630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 51495296 - 51495341
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||| |||||||||||||  |||| ||||||||||||||||||    
T  51495296 tcttaataactgtgaattagtgt--tttttcttataaattaggacgga 51495341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18913355 - 18913308
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  18913355 tcttaataagtgtgaattagtgtttttttgcttataaattaggacgga 18913308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23873837 - 23873791
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  23873837 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 23873791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26907101 - 26907055
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  26907101 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 26907055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31970319 - 31970269
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacggaagga 52  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  31970319 tcttaataagtgtgaattagtatt-ttttgcttataaattaggacggaagga 31970269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35941991 - 35942037
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  35941991 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 35942037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39026256 - 39026209
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  39026256 tcttaataaatgtgaattagtgtttttttgcttataaattaggacgga 39026209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40960484 - 40960434
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacggaagga 52  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  40960484 tcttaataaatgtgaattagtgtt-ttttgcttataaattaggacggaagga 40960434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18852373 - 18852419
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  18852373 tcttaataagtgtgaattagtgtt-ttttgcttataaattagaacgga 18852419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35189352 - 35189398
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  35189352 tcttaataaatgtgaattagtgtt-ttttgcttataaattaggacgga 35189398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44875329 - 44875375
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||    
T  44875329 tcttagtaagtgtgaattagtgtt-ttttgcttataaattaggacgga 44875375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 46949471 - 46949517
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  46949471 tcttaataaatgtgaattagtgtt-ttttgcttataaattaggacgga 46949517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 45357887 - 45357833
Alignment:
Q  1 tcttaataagtgtgaattagtgttatttt-gcttataaattaggacggaaggatt 54  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||    
T  45357887 tcttaataagtgtgaattaatgttttttttgcttataaattaggacggagggatt 45357833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 26479891 - 26479936
Alignment:
Q  3 ttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||| |||| ||||||||||||||||| |||||    
T  26479891 ttaataagtgtgaattattgtttttttgcttataaattagaacgga 26479936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28017806 - 28017849
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggac 45  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  28017806 tcttaataagtgtgaattaatgtt-ttttgcttataaattaggac 28017849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15311327 - 15311373
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| || ||||||||||||| ||||||    
T  15311327 tcttaataagtgtgaattagtgtt-ttatgcttataaattatgacgga 15311373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29488898 - 29488944
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||    
T  29488898 tcttaataagtgtgaattagtgtt-tttgacttataaattaggacgga 29488944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36037387 - 36037433
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  36037387 tcttaataagtgtgaatttgtgtt-ttttgcttataaattgggacgga 36037433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38942451 - 38942404
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  38942451 tcttaataagtgtgaattaatgtttttttgcttataaaatagaacgga 38942404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40220209 - 40220255
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  40220209 tcttaataagtgtgaattactgtt-ttttgcttgtaaattaggacgga 40220255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 40935623 - 40935581
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattagga 44  Q
    ||||||||| |||||||||||||| |||||||||||||||||||    
T  40935623 tcttaataaatgtgaattagtgtt-ttttgcttataaattagga 40935581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43656047 - 43656001
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  43656047 tcttaataagtgtgaattaatgtt-ttttgcttttaaattaggacgga 43656001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 49924569 - 49924615
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||    
T  49924569 tcttaataagtgtgaattaatgtt-ttttacttataaattaggacgga 49924615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28916525 - 28916480
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||  |||| ||||||||||||| ||||    
T  28916525 tcttaataagtgtgaattagtgt--tttttcttataaattagggcgga 28916480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4780 - 4826
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  4780 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 4826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5121463 - 5121417
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  5121463 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 5121417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10228062 - 10228108
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  10228062 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 10228108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17721816 - 17721770
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  17721816 tcttaataagtgtgaattaatgtt-ttttgcttataaattaggacgga 17721770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 374251 - 374295
Alignment:
Q  3 ttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||    
T  374251 ttaataaatgtgaattagtgtt-ttttgcttataaattaggacgga 374295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 17599464 - 17599508
Alignment:
Q  3 ttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||    
T  17599464 ttaataagtgtgaattaatgtt-ttttgcttataaattaggacgga 17599508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30766596 - 30766640
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacg 46  Q
    ||||||||||||||||||||| || |||||||||||||||||||||    
T  30766596 tcttaataagtgtgaattagtatt-ttttgcttataaattaggacg 30766640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 30949287 - 30949327
Alignment:
Q  3 ttaataagtgtgaattagtgttattttgcttataaattagga 44  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  30949287 ttaataagtgtgaattagtatt-ttttgcttataaattagga 30949327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 31887126 - 31887081
Alignment:
Q  3 ttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||| ||||| |||| ||||||||||||||||| |||||    
T  31887126 ttaataagtgtaaattaatgtttttttgcttataaattagaacgga 31887081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35462726 - 35462680
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  35462726 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 35462680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8146020 - 8145974
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  8146020 tcttaataagtgtgaattaatgtt-ttttgcttataaattaggacgga 8145974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8541571 - 8541525
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  8541571 tcttaataagtgtgaattaatgtt-ttttgcttataaattaggacgga 8541525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30086554 - 30086507
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  30086554 tcttaataagtgtgaattaatgtttttttgcttataaattagaacgga 30086507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31316808 - 31316762
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  31316808 tcttaataactgtgaattagtgtt-ttttgcttataaattaggacgga 31316762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31690627 - 31690577
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacggaagga 52  Q
    ||||||||||||||||||||| || |||||||||||||||| ||||||||||    
T  31690627 tcttaataagtgtgaattagtatt-ttttgcttataaattaagacggaagga 31690577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12639041 - 12639086
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  12639041 tcttaataagtgtgaattagtgt--tttttcttataaattaggacgga 12639086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16286090 - 16286044
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||    
T  16286090 tcttaataagtgtgaattaatgtt-ttttacttataaattaggacgga 16286044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25962455 - 25962409
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||    
T  25962455 tcttaataagtgtgaattattctt-ttttgcttataaattaggacgga 25962409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36413943 - 36413897
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  36413943 tcttaataagtgtgaatttgtgtt-ttttgtttataaattaggacgga 36413897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20915011 - 20915051
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattag 42  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  20915011 tcttaataagtgtgaattagtatt-ttttgcttataaattag 20915051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 24439726 - 24439770
Alignment:
Q  3 ttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||| | ||||| |||||||||||||||||||||||    
T  24439726 ttaataagtgtgaaattgtgtt-ttttgcttataaattaggacgga 24439770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21654396 - 21654442
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  21654396 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 21654442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26641081 - 26641035
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  26641081 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 26641035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32322208 - 32322162
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  32322208 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 32322162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 53020334 - 53020380
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  53020334 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 53020380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 55400889 - 55400935
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  55400889 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 55400935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34022750 - 34022794
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacg 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  34022750 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacg 34022794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46580686 - 46580733
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacggaa 49  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  46580686 tcttaataagtgtgaattagtgtt-ttttgcttataaattagaacggaa 46580733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16739134 - 16739088
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  16739134 tcttaataagtgtgaattagtgtt-tttggcttataaattaggacgga 16739088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37324052 - 37324006
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  37324052 tcttaataagtgtgaattagtgtt-ttttgcttataaattagaacgga 37324006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 51309564 - 51309615
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacggaagga 52  Q
    ||||||||| |||||||| ||||| ||||||||||||||| |||||||||||    
T  51309564 tcttaataaatgtgaatttgtgtttttttgcttataaattgggacggaagga 51309615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31126363 - 31126402
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaatta 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  31126363 tcttaataagtgtgaattagtgtt-ttttgcttataaatta 31126402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13541384 - 13541430
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  13541384 tcttaataagtgtgaattagtgtt-ttttggttataaattagaacgga 13541430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23514592 - 23514639
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||| ||||||||| |||| |||||||||||||||| ||||||    
T  23514592 tcttaataaatgtgaattaatgtttttttgcttataaattaagacgga 23514639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 46296045 - 46295999
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||||| || |||| ||||||||||||||||||    
T  46296045 tcttaataagtgtgaattagtatt-ttttacttataaattaggacgga 46295999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 51426772 - 51426816
Alignment:
Q  3 ttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||| || |||||||||| |||||||||||||||||||||||    
T  51426772 ttaataagcgtaaattagtgtt-ttttgcttataaattaggacgga 51426816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 792362 - 792316
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  792362 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 792316  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21539907 - 21539953
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  21539907 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 21539953  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33635486 - 33635532
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  33635486 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 33635532  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38071456 - 38071410
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  38071456 tcttaataagtgtgaattagtgtt-ttttgcttataaattaggacgga 38071410  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10478328 - 10478374
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  10478328 tcttaataagtgtgaattaatgtt-ttttgcttataaattaggacgga 10478374  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10979319 - 10979365
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||    
T  10979319 tcttaatgagtgtgaattagtgtt-ttttgcttataaattaggacgga 10979365  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14565379 - 14565333
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  14565379 tcttaataagtgtgaattaatgtt-ttttgcttataaattaggacgga 14565333  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15858695 - 15858649
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  15858695 tcttaataaatgtgaattagtgtt-ttttgcttataaattaggacgga 15858649  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29514026 - 29513980
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  29514026 tcttaataagtgtgaattactgtt-ttttgcttataaattaggacgga 29513980  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35832562 - 35832604
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattagga 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  35832562 tcttaataagtgtgaattagtgtt-ttttgcttataaattagga 35832604  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 43075899 - 43075945
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||    
T  43075899 tcttaataagtgtgaattagtatt-ttttgcttataaattaggacgga 43075945  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38549649 - 38549609
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattag 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  38549649 tcttaataagtgtgaattagtgtt-ttttgcttataaattag 38549609  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4092161 - 4092207
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||| ||||||| ||||||||||||||||| |||||    
T  4092161 tcttaataagtgtgaagtagtgtt-ttttgcttataaattagaacgga 4092207  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18833916 - 18833869
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    |||||||||||||||| | || || |||||||||||||||||||||||    
T  18833916 tcttaataagtgtgaaattgtatttttttgcttataaattaggacgga 18833869  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28424423 - 28424469
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||| | |||||||||| |||||||||||||||||||||||    
T  28424423 tcttaataagtatcaattagtgtt-ttttgcttataaattaggacgga 28424469  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 43451655 - 43451701
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||| ||||||||| || |||||||||||||||||||||||    
T  43451655 tcttaataagtatgaattagtatt-ttttgcttataaattaggacgga 43451701  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44804048 - 44804094
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  44804048 tcttaataagtgtgaattaatgttgttt-gcttataaattaggacgga 44804094  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 29514479 - 29514435
Alignment:
Q  3 ttaataagtgtgaattagtgttattttgcttataaattaggacgga 48  Q
    ||||||||| ||||||| |||| |||||||||||||||||||||||    
T  29514479 ttaataagtatgaattactgtt-ttttgcttataaattaggacgga 29514435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5091546 - 5091507
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaatta 41  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  5091546 tcttaataagtgtgaattagtatt-ttttgcttataaatta 5091507  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8784545 - 8784585
Alignment:
Q  1 tcttaataagtgtgaattagtgttattttgcttataaatta 41  Q
    ||||||||||| ||||||| |||| ||||||||||||||||    
T  8784545 tcttaataagtatgaattaatgtttttttgcttataaatta 8784585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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