View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1724_high_3 (Length: 367)
Name: NF1724_high_3
Description: NF1724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1724_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 301
Target Start/End: Complemental strand, 22050052 - 22049765
Alignment:
| Q |
12 |
aaaggcaaaaaatcatggactgaatttggaaaggactggaatttgtttacactattgaacaaatgtaaggaaggagatgttttgaagtttcgatttgtca |
111 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22050052 |
aaaggcaaaaaatcatggactgaattcggaagggactggaatttgtttacactattgaacaaatgtaaggaaggagatgttttgaagtttcgatttgtca |
22049953 |
T |
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| Q |
112 |
atcataatcactcaaatcttataatggttgcaaaaatgtgatttcgttatgaatctatgtcaattattgtatctttgtgttgaactacaataatatgtta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |
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| T |
22049952 |
atcataatcactcaaatcttataatggttgcaaaaatgtgatttggttatgaatctatgtcaatta--gtatctttgtgttgaagtgcaataatatgtta |
22049855 |
T |
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| Q |
212 |
tctgtcatataagtttcgatctatctaccattatgtctgtaacaaatctcatgtcatcatcaattatatgtaatttgtttgctattataa |
301 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22049854 |
tctgtcatataagtttggatctatctaccattatgtctgtaacaaatctcatgtcatcatcaattatatgtaatttgtttagtattataa |
22049765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 22049724 - 22049675
Alignment:
| Q |
303 |
tttcttttgctattatcccacaacaacatgaatccgtttattatataatt |
352 |
Q |
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| T |
22049724 |
tttcttttgctattatcccacaccaacatgaatctgtttattatgtaatt |
22049675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 22059381 - 22059336
Alignment:
| Q |
11 |
caaaggcaaaaaatcatggactgaatttggaaaggactggaatttg |
56 |
Q |
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| T |
22059381 |
caaaggcagaaaatcatggacttaatttggaagcgactggaatttg |
22059336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 22059305 - 22059257
Alignment:
| Q |
87 |
gatgttttgaagtttcgatttgtcaatcataatcactcaaatcttataa |
135 |
Q |
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|||||||||||||| ||||||||| ||||||||| |||||||| |||| |
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| T |
22059305 |
gatgttttgaagttccgatttgtcgatcataatcgttcaaatctaataa |
22059257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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