View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1724_low_1 (Length: 541)
Name: NF1724_low_1
Description: NF1724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1724_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 10 - 524
Target Start/End: Complemental strand, 6025159 - 6024648
Alignment:
| Q |
10 |
acacagacggaattttaatatgataagcataaatctcaatctgggattggcagaggcaaaggtgagaagcatggtttacaggggaagagaatggaactac |
109 |
Q |
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| T |
6025159 |
acacagacggaattttaatatgataagcataaatctcaatctgggattggcagaggcaaaggtgagaagcatggtttacaggggaagagaatggaactac |
6025060 |
T |
|
| Q |
110 |
cagggcatcatccatgtacagcatgccgttattcacttctagcctaccttgtctatttctaatgtctatagaggatgctctcagactatgagcagaaaga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6025059 |
cagggcatcatccatgtacagcatgccgttattcacttctagcctaccttgtctatttctaatgtctatagagcatgctctcagactatgagcagaaaga |
6024960 |
T |
|
| Q |
210 |
gagccattaacaaaacacttgactgtaaaatagatgtacttgtaatgattggtgaaaaatggtcataaaggagaatagtaatgttgcagttttatgaatt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6024959 |
gagccattaacaaaacacttgactgtaaaatagatgtacttgtaatgattggtgaaaaatggtcataaaggagaatagtgatgttgcagttttatgaatt |
6024860 |
T |
|
| Q |
310 |
taggactttcataaaccagattcttaccctatgtgtgcatgtcctaaattgaatttgtgtcccgttcaatctgattttatattgtagtgcttaaaactta |
409 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6024859 |
taggactttcataaaccagattcttaccttatgtgtgcatgtcctaaattgaatttgtgtcccgttcaatctgattttatattgcagtgcttaaaactta |
6024760 |
T |
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| Q |
410 |
caatatnnnnnnnnnnnnnnnnnnggcaccatcatgagaacagatttaagaaatctaacttactgaaatttaattttaattattataaaaatgaattact |
509 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6024759 |
caata---aaaaaaaaaaaaaaaaggcaccatgatgagaacagatttaagaaatctaacttactgaaatttaattttaattattataaaaatgaattact |
6024663 |
T |
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| Q |
510 |
catcatggcaacatg |
524 |
Q |
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| T |
6024662 |
catcatggcaacatg |
6024648 |
T |
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