View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1724_low_10 (Length: 238)
Name: NF1724_low_10
Description: NF1724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1724_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 31548695 - 31548915
Alignment:
| Q |
17 |
acaaaggcctcacgcgacagaatacacggatgttcccttttaactcctgttaaaactgagattgattaataaggtgtctgannnnnnncttataatcaac |
116 |
Q |
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| T |
31548695 |
acaaaggcctcacgcgacagaatacacggatgttcccttttaactcctgttaaaactgagattgattaataaggtgtctgatatttt-cttataatcaac |
31548793 |
T |
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| Q |
117 |
aaatcttttggttcaatgaattaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaatcttctaagcgtctt |
216 |
Q |
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| T |
31548794 |
aaatcttttggttcaatgaattaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaatcttctaagcgtctt |
31548893 |
T |
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| Q |
217 |
tgcaactcgtcgacaagttttt |
238 |
Q |
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| T |
31548894 |
tgcaactcgtcgacaagttttt |
31548915 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 34650366 - 34650299
Alignment:
| Q |
137 |
ttaccaaaatggtattgtgtaattttttccgcagcctctccccttctataagtttatattctgaatct |
204 |
Q |
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| T |
34650366 |
ttaccaaaattgtattatgtaattctttcctcagcttctccccttctataagtttgtattctgcatct |
34650299 |
T |
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