View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1724_low_11 (Length: 232)

Name: NF1724_low_11
Description: NF1724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1724_low_11
NF1724_low_11
[»] chr4 (4 HSPs)
chr4 (94-160)||(8539629-8539695)
chr4 (2-97)||(8539493-8539580)
chr4 (97-151)||(8537525-8537579)
chr4 (94-133)||(8568374-8568414)
[»] scaffold1450 (1 HSPs)
scaffold1450 (94-159)||(1719-1784)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 8539629 - 8539695
Alignment:
Q  94 gaaaacaacacagcacaagcaaccaaagatagtttgcattactaacaagtaaatcaaaagaaaaaac 160  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8539629 gaaaacaacacagcacaagcaaccaaagatagtttgcattgctaacaagtaaatcaaaagaaaaaac 8539695  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 8539493 - 8539580
Alignment:
Q  2 gctcttttaagtttataatggaaaccttgcccatattgcactcaactatgtagactgtgcatgtcaatgttaattgattgtatttgacaaaggaaa 97  Q
    ||||||| |||||||||| |||||||    ||||||||||||| |||||||||||| |||||||||||||||    ||||||||||||||||||||    
T  8539493 gctctttcaagtttataaaggaaacc----ccatattgcactccactatgtagactatgcatgtcaatgtta----attgtatttgacaaaggaaa 8539580  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 8537525 - 8537579
Alignment:
Q  97 aacaacacagcacaagcaaccaaagatagtttgcattactaacaagtaaatcaaa 151  Q
    |||||||||||||||| | |||| ||||||||||||| |||||||||||| ||||    
T  8537525 aacaacacagcacaagaacccaatgatagtttgcattgctaacaagtaaaccaaa 8537579  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 8568374 - 8568414
Alignment:
Q  94 gaaaacaacacagcacaag-caaccaaagatagtttgcatt 133  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  8568374 gaaaacaacacagcacaaggcaaccaaagatagtttgcatt 8568414  T

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Target: scaffold1450 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1450
Description:

Target: scaffold1450; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 1719 - 1784
Alignment:
Q  94 gaaaacaacacagcacaagcaaccaaagatagtttgcattactaacaagtaaatcaaaagaaaaaa 159  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  1719 gaaaacaacacagcacaagcaaccaaagatagtttgcattgctaacaagtaaatcaaaaaaaaaaa 1784  T

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