View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1724_low_5 (Length: 304)
Name: NF1724_low_5
Description: NF1724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1724_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 11835322 - 11835610
Alignment:
| Q |
1 |
aacatatcaagtatgataaagggttggttagagatgtatgaaataccctcgtaatcatgtccaccgcttcttattttgatttgaatgttgatttgcttag |
100 |
Q |
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| T |
11835322 |
aacatatcaagtatgataaagggttggttagagatgtatgaaataccctcgtaatcatgtccaccgcttcttattttgatttgaatgttgacttgcttag |
11835421 |
T |
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| Q |
101 |
cacatattacagtggattggacatgcgaaggttgttttggagtgactatgagtaatggttttgttattgaagttgtgttgaaacgtgcgttacggatgta |
200 |
Q |
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| T |
11835422 |
cacatattacagtggattggacatgcgaaggttgttttggagtgactatgagtaatggttttgttattgaagttgtgttgaaacgtgcgttacggatgta |
11835521 |
T |
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| Q |
201 |
gttttgaaggacagtggaaaatgaaaggtttgtttgggagaaaacaatgttggagattgatggatcttttgtgttttgtgtgagacagt |
289 |
Q |
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| T |
11835522 |
gttttgaaggacagtggaaaatgaaaggtttgtttgggagaaaacaatgttggagattgatggatcttttgtgttttgtgtgagacagt |
11835610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 40 - 289
Target Start/End: Complemental strand, 11821003 - 11820754
Alignment:
| Q |
40 |
gaaataccctcgtaatcatgtccaccgcttcttattttgatttgaatgttgatttgcttagcacatattacagtggattggacatgcgaaggttgttttg |
139 |
Q |
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| T |
11821003 |
gaaataccctcataatcatgtccaccacttctgattttgatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgttttg |
11820904 |
T |
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| Q |
140 |
gagtgactatgagtaatggttttgttattgaagttgtgttgaaacgtgcgttacggatgtagttttgaaggacagtggaaaatgaaaggtttgtttggga |
239 |
Q |
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| T |
11820903 |
gagttactatgagtaatggttttgtcgttgaagttgtgttgaaacgtgcgttacgtatgtagtttttaagaacaatggaaaatgaagtgtttgtttgaga |
11820804 |
T |
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| Q |
240 |
gaaaacaatgttggagattgatggatcttttgtgttttgtgtgagacagt |
289 |
Q |
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| T |
11820803 |
gaaaacaatgttggagattgttggatctgtgttgttttgtgtgagacagt |
11820754 |
T |
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