View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1724_low_8 (Length: 243)
Name: NF1724_low_8
Description: NF1724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1724_low_8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 41971575 - 41971801
Alignment:
| Q |
18 |
gcaccaaccatccaagaggaccccaagaccatgcgaatcccatcacatacacacatatgcctatcacaacaagcaatgcataccactttggaagctcacc |
117 |
Q |
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| T |
41971575 |
gcaccaaccatccaagaggaccccaagaccatgtgaatcccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggaagctcacc |
41971674 |
T |
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| Q |
118 |
tggatttccatcaactccaaatttaaatgcaat-ggccactgctacaataatctgtgtcaaaacaaatttgtattagcaaagaaatatgagcaacatatt |
216 |
Q |
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| T |
41971675 |
tggatttccatcaactccaaatttaaatgcaatgggccactgctacaataatctgtgtcaaaacaaatttgtattagcaaagaaatatgagcaacatatt |
41971774 |
T |
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| Q |
217 |
attgtggtatgtattattttgcctaac |
243 |
Q |
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| T |
41971775 |
attgtggtatgtattattttgcctaac |
41971801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 18233962 - 18234052
Alignment:
| Q |
18 |
gcaccaaccatccaagaggaccccaagaccatgcgaatcccatcacatacacacatatgcctatcacaacaagcaatgcataccactttgg |
108 |
Q |
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| T |
18233962 |
gcaccaaccaacctagaggaccccaagaccatgcaaatcctgctacgtacacacaaatgcacataacaacaacaattgcataccactttgg |
18234052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 41971856 - 41971885
Alignment:
| Q |
204 |
tgagcaacatattattgtggtatgtattat |
233 |
Q |
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| T |
41971856 |
tgagcaacatattattgtggtatgtattat |
41971885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 1239069 - 1239287
Alignment:
| Q |
18 |
gcaccaaccatccaagaggaccccaagaccatgcgaatcccatcacatacacacatatgcctatcacaacaagcaatgcataccactttggaagctcacc |
117 |
Q |
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| T |
1239069 |
gcaccaaccatccaagaggaccccaagaccatgcgaatcccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggaagctcgcc |
1239168 |
T |
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| Q |
118 |
tggatttccatcaactccaaatttaaatgcaatggccactgctacaataatctgtgtcaaaacaaatttgtattagcaaagaaatatgagcaacatatta |
217 |
Q |
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| T |
1239169 |
tggatttccatcaactccaaatttagattgaacggccgctgctacaataatctgtgtcaaaacaaattcgtattagcaaagaaagatgagcaacatatta |
1239268 |
T |
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| Q |
218 |
ttgtggtatgtattatttt |
236 |
Q |
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| T |
1239269 |
ttgtggtaggtgttatttt |
1239287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 42517688 - 42517842
Alignment:
| Q |
18 |
gcaccaaccatccaagaggaccccaagaccatgcgaatcccatcacatacacacatatgcctatcacaacaagcaatgcataccactttggaagctcacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42517688 |
gcaccaaccatccaagaggaccccaagaccatgcaaaacccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcacc |
42517787 |
T |
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| Q |
118 |
tggatttccatcaactccaaatttaaatgcaatggccactgctacaataatctgt |
172 |
Q |
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| T |
42517788 |
aggattcccatcaactccaaatttagatgcaatggccacggctacaatgatctgt |
42517842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 21403577 - 21403419
Alignment:
| Q |
62 |
acatacacacatatgcctatcacaacaagcaatgcataccactttggaagctcacctggatttccatcaactccaaatttaaatgcaatggccactgcta |
161 |
Q |
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||||||||| ||||||||| |||||||| || | |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||| |
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| T |
21403577 |
acatacacatatatgcctaccacaacaatca-tacataccactttgacagctcacctggatttccatcaacaccaaatttagatgcaatggctgctgcta |
21403479 |
T |
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| Q |
162 |
caataatctgtgtcaaaacaaatttgtattagcaaagaaatatgagcaacatattattgt |
221 |
Q |
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| T |
21403478 |
caataatctgtgccaaaacaaatttgtattaggaaagaaatatgtgtaaaatattattgt |
21403419 |
T |
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