View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1724_low_9 (Length: 239)
Name: NF1724_low_9
Description: NF1724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1724_low_9 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 12611145 - 12610917
Alignment:
| Q |
11 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
110 |
Q |
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| T |
12611145 |
cgaaaaatatgcacaatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
12611046 |
T |
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| Q |
111 |
tgcaacaagggtcacccgtcaacatcactaaggttgtagtttcatcaacatttggtatcattacaaaggccgcgtttggcagcaaaggcaaaggcagaga |
210 |
Q |
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| T |
12611045 |
cgcaacaagggtcgcccgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagaga |
12610946 |
T |
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| Q |
211 |
agaggttgggtctattagagatggagaat |
239 |
Q |
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| T |
12610945 |
agagtttggatctattggagatggagaat |
12610917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 15884903 - 15885095
Alignment:
| Q |
11 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
110 |
Q |
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| T |
15884903 |
cgaaaaatatgcacaatggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggtt |
15885002 |
T |
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| Q |
111 |
tgcaacaagggtcacccgtcaacatcactaaggttgtagtttcatcaacatttggtatcattacaaaggccgcgtttggcagcaaaggcaaag |
203 |
Q |
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| T |
15885003 |
cgaagcaagggtcatccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaag |
15885095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 12638145 - 12638017
Alignment:
| Q |
11 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
110 |
Q |
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| T |
12638145 |
cgaaaaatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt |
12638046 |
T |
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| Q |
111 |
tgcaacaagggtcacccgtcaacatcact |
139 |
Q |
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| T |
12638045 |
cacaacaaggatcacccatcaacatcact |
12638017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 63224 - 63150
Alignment:
| Q |
65 |
ccaataagagaagaagagcttaacaatctcgtaaaaaagattgatttgcaacaagggtcacccgtcaacatcact |
139 |
Q |
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| T |
63224 |
ccaataagagaagaagagctctccaatctcatcaaaaggattgatttgcaacaaggattgcctgtcaacatcact |
63150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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