View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1725-Insertion-1 (Length: 792)
Name: NF1725-Insertion-1
Description: NF1725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1725-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Complemental strand, 12678851 - 12678322
Alignment:
| Q |
8 |
taaatcgatcaatattgaagaaacttaatacacatgtgtagggctctgaaatttggtcataatataaaaaggacaagtagtggtactaagataacaaata |
107 |
Q |
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| T |
12678851 |
taaatcgatcaatattgaagaaacttaatacacatgtgtagggctctgaaatttggtcataatataaaaaggacaagtagtggtactaagataacaaata |
12678752 |
T |
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| Q |
108 |
ttgccaaaccttgttagcaacgtgttggcattatatgtacatatatatgtacagtactactgcatatcattgatttgtttagttggcttatatatatatt |
207 |
Q |
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| T |
12678751 |
ttgccaaaccttgttagcaacgtgttggcattatatgtacatatatatgtacagtactactgcatatcattgatttgtttagttggcttatatatatatt |
12678652 |
T |
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| Q |
208 |
cgaacaatcttctgaataagtcatgcatgttattatgagaggcagaggtccataaattgtgacttgtgaggggtcagaaacacagaaataaaccctctca |
307 |
Q |
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| T |
12678651 |
cgaacaatcttctgaataagtcatgcatgttattatgagaggcagaggtccataaattgtgacttgtgaggggtcagaaacacagaaataaaccctctca |
12678552 |
T |
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| Q |
308 |
aaccatggtccatcttgcgcacgccgattcaaggacacagatannnnnnnnnnnnnnnnctaaattaccattcatatgcaaataagtgaataaatcaatg |
407 |
Q |
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| T |
12678551 |
aaccatggtccatcttgcgcacgccgattcaaggacacagatattttattttattttttctaaattaccattcatatgcaaataagtgaataaatcaatg |
12678452 |
T |
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| Q |
408 |
tttacttcttcaagatcacttgcatacaatacattctaagtctaaacccctttctactttgattaggaaaataatcataaaactttatgtaatggctgtt |
507 |
Q |
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| T |
12678451 |
tttacttcttcaagatcacttgcatacaatacattctaagtctaaacccctttccactttgattaggaaaataatcataaaactttatgtaatggctgtt |
12678352 |
T |
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| Q |
508 |
tgtttgtaatgcaagaaaagtccaaatatg |
537 |
Q |
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| T |
12678351 |
tgtttgtaatgcaagaaaagtccaaatatg |
12678322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 619 - 668
Target Start/End: Complemental strand, 12678254 - 12678205
Alignment:
| Q |
619 |
acaataatcatagtaaattgattacaaatatatagacgtgcatttgcaag |
668 |
Q |
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| T |
12678254 |
acaataatcatagtaaattgattacaaatatatagacgtgcatttgcaag |
12678205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 556 - 607
Target Start/End: Complemental strand, 12678289 - 12678238
Alignment:
| Q |
556 |
gtgaagaaaaacaacaccggacaaaagaatgcatgacaataatcatagtaaa |
607 |
Q |
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| T |
12678289 |
gtgaagaaaaacaacaccggacaaaagaatgcataacaataatcatagtaaa |
12678238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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