View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1725-Insertion-2 (Length: 584)
Name: NF1725-Insertion-2
Description: NF1725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1725-Insertion-2 |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 162886 - 163219
Alignment:
| Q |
8 |
catcgtcgataaacttggtgtacaaacctttgagctcttccttaggaatttcaacgaccatgacaagggattatagttcttctttggcatctccatcttc |
107 |
Q |
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| T |
162886 |
catcgtcgataaacttggtgtacaaacctttgagctcttccttaggaatttcaacgaccatgacaagggattatagttcttctttggcatcttcatcttc |
162985 |
T |
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| Q |
108 |
gtttctcttgcgagcaatgcataccctgatactcttgggaacacttctaattccatggctctagatagccttgtaattagcttgacatcgactctaacat |
207 |
Q |
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| T |
162986 |
gtttctcttgcgagcaatgcataccctgatactcttgggaacacttctaattccatggctctagataaccttgtaattagcttgacatcgactctaacat |
163085 |
T |
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| Q |
208 |
cgtagtgcccatggattttggtgccttcttcttgaagttagtaagagatccaattatgcaattacacatacaacagcaggaatcatctaacaaagggtgt |
307 |
Q |
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| T |
163086 |
cgtagtgcccatggattttggtgccttcttcttgaagttagtaagagatccaattatgcaattacacatacaacagcaggaatcatctaacaaagggtgt |
163185 |
T |
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| Q |
308 |
cctaatcacctatgctctcattctcttgatgttt |
341 |
Q |
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| T |
163186 |
cctaatcacctatgctctcaatctcttgatgttt |
163219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 400 - 584
Target Start/End: Original strand, 163295 - 163479
Alignment:
| Q |
400 |
tgaattatgacggaatgttggtggattccctgtaaaattgggatttgttgactatatctaaggctgaaaccatttaagaaaacttggttcatgagatcat |
499 |
Q |
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| T |
163295 |
tgaattatgacggtatgttggtggattccctgtaaaattgggatttgttgactatatctaaggctgaaaccatttaagaaaacttggttcatgagatcat |
163394 |
T |
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| Q |
500 |
ttattagtgtaaaatgcttggttattgtttttgtaagagtgtagatgatgattaaggagcttgttcatgagtacacgaatttggt |
584 |
Q |
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| T |
163395 |
tttttagtgtaaaatgcttggttattgtttttgtaagagtgtagatgatgattaaggagcttgttcatgagtacacgaatttggt |
163479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 34508041 - 34508258
Alignment:
| Q |
8 |
catcgtcgataaacttggtgtacaaacctttgagctcttccttaggaatttcaacgaccatgacaagggattatagttcttctttggcatctccatcttc |
107 |
Q |
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| T |
34508041 |
catcatcgatgaccttggtgcccaaaccttttaactcttctttaggaatttcaacgacggtgacaagggagtataactcttccttggcatcttcgtcgtc |
34508140 |
T |
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| Q |
108 |
gtttctcttgcgagcaatgcataccctgatactcttgggaacacttctaattccatggctctagatagccttgtaattagcttgacatcgactctaacat |
207 |
Q |
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| T |
34508141 |
attcctcttgcgagcaatgcgtaccctgatcctccttggtacacttctgattccctggctccagatagccttgt--tcaacttaacgtcaactctaacat |
34508238 |
T |
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| Q |
208 |
cg-tagtgcccatggatttt |
226 |
Q |
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| T |
34508239 |
cgttagtgcccatggctttt |
34508258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 487 - 544
Target Start/End: Original strand, 30884456 - 30884513
Alignment:
| Q |
487 |
ttcatgagatcatttattagtgtaaaatgcttggttattgtttttgtaagagtgtaga |
544 |
Q |
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| T |
30884456 |
ttcatgagctcatttcttgggggaaaatgcttggttattgtttttgttagagtgtaga |
30884513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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