View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1725-Insertion-4 (Length: 868)

Name: NF1725-Insertion-4
Description: NF1725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1725-Insertion-4
NF1725-Insertion-4
[»] chr7 (5 HSPs)
chr7 (8-452)||(44345887-44346331)
chr7 (499-868)||(44346330-44346699)
chr7 (607-757)||(48888139-48888289)
chr7 (620-757)||(6232179-6232317)
chr7 (633-745)||(19883474-19883586)
[»] chr4 (5 HSPs)
chr4 (551-859)||(55353464-55353782)
chr4 (552-757)||(18847958-18848163)
chr4 (552-745)||(55329054-55329247)
chr4 (608-757)||(42111003-42111152)
chr4 (680-725)||(29083194-29083239)
[»] chr2 (3 HSPs)
chr2 (553-712)||(38970953-38971112)
chr2 (665-711)||(16080468-16080514)
chr2 (670-707)||(9017449-9017486)
[»] chr6 (1 HSPs)
chr6 (551-757)||(380659-380866)
[»] chr8 (4 HSPs)
chr8 (626-754)||(42202667-42202795)
chr8 (608-757)||(44684431-44684580)
chr8 (653-708)||(25967870-25967925)
chr8 (673-707)||(3578043-3578077)
[»] chr3 (1 HSPs)
chr3 (626-757)||(51361250-51361381)
[»] chr5 (3 HSPs)
chr5 (607-755)||(42628995-42629143)
chr5 (626-704)||(3678282-3678360)
chr5 (607-705)||(2756348-2756446)
[»] scaffold0691 (1 HSPs)
scaffold0691 (608-757)||(1138-1287)


Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 452
Target Start/End: Original strand, 44345887 - 44346331
Alignment:
Q  8 cttattgatactgaataagctctgagggttttttatggataccaactgctagttctttttgtaccnnnnnnnnctagtggttttatttcgggtgtgtgta 107  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  44345887 cttattgatactaaataagctctcagggttttttatggataccaactgctagttctttttgtaccaaaaaaaactagtggttttatttcgggtgtgtgta 44345986  T
Q  108 tatattgtttctttttaaatcgtccaatccaaaaaatgtgtctgagggaagaaattaataaacaaagtctagcatatgtctcaatattgnnnnnnnnnnn 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||               
T  44345987 tatattgtttctttttaaatcgtccaatccaaaaaatgtgtctgagggtagaaattaataaacaaagtctagcatatgtctgaatattgttttttttttt 44346086  T
Q  208 ngttcaattagagttgtggattagaatttggatgctgcttgctctctatatgtatgacgacatgcaatcttaaatggttttgtttatgattgataaaatg 307  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44346087 tgttcaattagagttgtggattagaatttggatgctgcttgctctctatatgtatgacgacatgcaatcttaaatggttttgtttatgattgataaaata 44346186  T
Q  308 acgacttccgaagaagaatttgtattatcaactgatatgttaatattgcgcttcgtaaaattagtattaacaaatctcccatttcctaaaagagattaga 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44346187 acgacttccgaagaagaatttgtattatcaactgatatgttaatattgcgcttcgtaaaattagtattaacaaatctcccatttcctaaaagagattaga 44346286  T
Q  408 aagtgttaaattacaaaagttcaaataaactacaaaaaagctaat 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44346287 aagtgttaaattacaaaagttcaaataaactacaaaaaagctaat 44346331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 499 - 868
Target Start/End: Original strand, 44346330 - 44346699
Alignment:
Q  499 atcaagcatgaaaatcaagagagtaatggttttatgagtcttcaaccaccactcgatttggaaagtaaggaacgataggatattcaatactcttttcaag 598  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44346330 atcaagcatgaaaatcgagagagtaatggttttatgagtcttcaaccaccactcgatttggaaagtgaggaacgataggatattcaatactcttttcaag 44346429  T
Q  599 gatgtggctgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttgga 698  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||||    
T  44346430 gatgtggctgaaatcgtagatgatatcaaggtgctttcgtgtaattgggcgaattctagacttaaaagtcctccttgcctcttttacaagtggtgctgga 44346529  T
Q  699 accccaaagaatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttgcagttggtgcttgctgtttttcggttgtgcctttctgcttc 798  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44346530 accccaaagaatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttgcagttggtgtttgctgtttttcggttgtgcctttctgcttc 44346629  T
Q  799 tgattatctgttgtagcagtttttggcttctggttttaggtagtgctggttggttgttgctactgtttgg 868  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44346630 tgtttatctgttgtagcagtttttggcttctggttttaggtagtgctggttggttgttgctactgtttgg 44346699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 607 - 757
Target Start/End: Original strand, 48888139 - 48888289
Alignment:
Q  607 tgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaa 706  Q
    |||||| || |||||||| |||||||| ||||||||||||| |||||||||||| || |||| ||||||||||| |||||| |||||||||||||||||     
T  48888139 tgaaatggttgatgatattaaggtgctctcgtggaattgggtgaattctagactaaagagtcctccttgcctctattacgagtggtgttggaaccccaag 48888238  T
Q  707 gaatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttg 757  Q
    ||||| |||||| | | ||||||| ||||  ||||||||  ||||||||||    
T  48888239 gaatgtcttttgagattggtggggtagttctagaggtgtccgggacttttg 48888289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 620 - 757
Target Start/End: Original strand, 6232179 - 6232317
Alignment:
Q  620 gatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgc 719  Q
    ||||| |||||| |||||||||||||||| |||||||||||||  |||| ||| ||||||| |||||| ||||| ||||||||||| |||||| | |||     
T  6232179 gatattaaggtgatttcgtggaattgggctaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattga 6232278  T
Q  720 g-ttaggtggggaagtttcagaggtgttagggacttttg 757  Q
    | | | |||||| ||||| ||||||||  ||||||||||    
T  6232279 gataatgtggggcagttttagaggtgtccgggacttttg 6232317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 633 - 745
Target Start/End: Complemental strand, 19883586 - 19883474
Alignment:
Q  633 tttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttaggtggggaa 732  Q
    |||||||||||||||||   |||||||| || |||| ||| ||||||| |||||| ||||||||||||||||| |||||  | ||| | ||| ||||| |    
T  19883586 tttcgtggaattgggcggtgtctagactaaagagtcctccgtgcctctattacgagtggtgttggaaccccaaggaatgtttattgagatagttggggta 19883487  T
Q  733 gtttcagaggtgt 745  Q
    |||| ||||||||    
T  19883486 gttttagaggtgt 19883474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 1e-89; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 551 - 859
Target Start/End: Original strand, 55353464 - 55353782
Alignment:
Q  551 tcgatttggaaagtaaggaacgataggatattcaatactcttttcaaggatgtggctgaaatcgtagatgatatcaaggtgctttcgtggaattgggcga 650  Q
    |||||||||||||  ||||| |||||||| |||||| ||||| |||||||||| ||||| ||||| ||||| ||||||||| | ||||||||||||||||    
T  55353464 tcgatttggaaagcgaggaatgataggattttcaattctcttgtcaaggatgttgctgatatcgttgatgacatcaaggtgatctcgtggaattgggcga 55353563  T
Q  651 attctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttaggtggggaagtttcagaggtgttaggg 750  Q
    |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||||| |||||||||||||  ||||    
T  55353564 attccagacttaaaagtcctccttgcctcttttacgattggtgctggaaccccaagaaatgccttttgcgataggtggggtagtttcagaggtggcaggg 55353663  T
Q  751 acttttgcagttggtgcttgctgtttttcggttgtgcctttctgcttctgattatctgttgtagcagtttttggc----------ttctggttttaggta 840  Q
    ||| ||| |||||||| ||||||||||| ||||||||||||||||||||| ||||| || |||||||||||||||          |||||||||||||||    
T  55353664 actattgtagttggtgtttgctgttttttggttgtgcctttctgcttctgtttatccgtagtagcagtttttggcgtctggttgtttctggttttaggta 55353763  T
Q  841 gtgctggttggttgttgct 859  Q
    |||||||||||||| ||||    
T  55353764 gtgctggttggttgctgct 55353782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 552 - 757
Target Start/End: Original strand, 18847958 - 18848163
Alignment:
Q  552 cgatttggaaagtaaggaacgataggatattcaatactcttttcaaggatgtggctgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaa 651  Q
    |||||||||||| ||| || |||||||| || |||| |||| | || |||   | |||||| || ||||| || |||||||||| |||||||||||||      
T  18847958 cgatttggaaagcaagaaatgataggatttttaataatcttgtgaaagatcgtgatgaaattgttgatgacattaaggtgctttggtggaattgggcggt 18848057  T
Q  652 ttctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttaggtggggaagtttcagaggtgttaggga 751  Q
    | ||||||||||||||| ||| ||||||| |||||| ||||||||||||||||| |||||||| ||| | ||| ||||| ||||| ||||||||  ||||    
T  18848058 tactagacttaaaagtcctccctgcctctattacgagtggtgttggaaccccaaggaatgcctattgagatagttggggtagttttagaggtgtccggga 18848157  T
Q  752 cttttg 757  Q
    ||||||    
T  18848158 cttttg 18848163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 552 - 745
Target Start/End: Original strand, 55329054 - 55329247
Alignment:
Q  552 cgatttggaaagtaaggaacgataggatattcaatactcttttcaaggatgtggctgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaa 651  Q
    ||||||||||||  ||||| |||||||| |||||||  ||||| |||||| | | |||||| || || || || |||||| ||||||| |||||  ||||    
T  55329054 cgatttggaaagcgaggaatgataggattttcaataaccttttgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtgaaattgaacgaa 55329153  T
Q  652 ttctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttaggtggggaagtttcagaggtgt 745  Q
    ||| |||||||| |||  ||||||||||| |||||| ||||||||||||| ||| |||||| | ||| | ||||||||| ||||| ||||||||    
T  55329154 ttcaagacttaagagttctccttgcctctattacgagtggtgttggaacctcaaggaatgcttattgagataggtggggcagttttagaggtgt 55329247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 608 - 757
Target Start/End: Complemental strand, 42111152 - 42111003
Alignment:
Q  608 gaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaag 707  Q
    ||||| || ||||| || |||||||| || ||||||||||||| | | |||||||| |||| ||  ||||||||||  || ||||||||||||||||| |    
T  42111152 gaaattgttgatgacattaaggtgctctcttggaattgggcgattacaagacttaagagtcctcactgcctcttttttgagtggtgttggaaccccaagg 42111053  T
Q  708 aatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttg 757  Q
    ||||| |  | ||  |||||||| ||||| ||||||||  ||||||||||    
T  42111052 aatgcttgctccgacaggtggggtagttttagaggtgtccgggacttttg 42111003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 725
Target Start/End: Original strand, 29083194 - 29083239
Alignment:
Q  680 ttttacgattggtgttggaaccccaaagaatgccttttgcgttagg 725  Q
    ||||| || |||||||||||||| ||||||||||||||||| ||||    
T  29083194 ttttatgaatggtgttggaacccaaaagaatgccttttgcgatagg 29083239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 553 - 712
Target Start/End: Original strand, 38970953 - 38971112
Alignment:
Q  553 gatttggaaagtaaggaacgataggatattcaatactcttttcaaggatgtggctgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaat 652  Q
    |||||||||||  ||||| |||||||| ||||| | ||   | |||||| | | |||||| || || || || |||||| |||||||||||||||| |||    
T  38970953 gatttggaaagagaggaatgataggattttcaaaaatcaaatgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtggaattgggcaaat 38971052  T
Q  653 tctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgc 712  Q
    |||||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||    
T  38971053 tctagacttaaaagtcctcattgcctctattacgagtggtgttggaaccccaaagaatgc 38971112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 711
Target Start/End: Original strand, 16080468 - 16080514
Alignment:
Q  665 agtcatccttgcctcttttacgattggtgttggaaccccaaagaatg 711  Q
    |||| ||||||||||||||| || ||||||||||||||||| |||||    
T  16080468 agtcctccttgcctcttttatgagtggtgttggaaccccaaggaatg 16080514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 707
Target Start/End: Complemental strand, 9017486 - 9017449
Alignment:
Q  670 tccttgcctcttttacgattggtgttggaaccccaaag 707  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  9017486 tccttgcctcttctacgattggagttggaaccccaaag 9017449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 551 - 757
Target Start/End: Complemental strand, 380866 - 380659
Alignment:
Q  551 tcgatttggaaagtaaggaacgataggatattcaatactcttttcaaggatgtggctgaaatcgtagatgatatcaaggtgctttcgtggaattgggcga 650  Q
    |||||||||||||| || || |||||||| || || | | ||| ||||||| | | |||| | || || ||||| |||||| |||||||||||||||| |    
T  380866 tcgatttggaaagtgagaaatgataggatctttaacaatttttccaaggattttggtgaattggtggaggatattaaggtgatttcgtggaattgggcta 380767  T
Q  651 attctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgcg-ttaggtggggaagtttcagaggtgttagg 749  Q
    ||||||||||||  |||| ||| ||||||| |||||| ||||| ||||||||||| |||||| | ||| | | | |||||| ||||| ||||||||  ||    
T  380766 attctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattgagataacgtggggcagttttagaggtgtccgg 380667  T
Q  750 gacttttg 757  Q
    ||||||||    
T  380666 gacttttg 380659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 626 - 754
Target Start/End: Original strand, 42202667 - 42202795
Alignment:
Q  626 aaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttagg 725  Q
    |||||| ||| ||||||||||| ||||||||||||||| |||| ||||||||||| |||||| |||||||||||||| |  |||||| | ||| | |||     
T  42202667 aaggtgattttgtggaattgggtgaattctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagataga 42202766  T
Q  726 tggggaagtttcagaggtgttagggactt 754  Q
    ||||| ||||| ||||||||  |||||||    
T  42202767 tggggcagttttagaggtgtctgggactt 42202795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 608 - 757
Target Start/End: Original strand, 44684431 - 44684580
Alignment:
Q  608 gaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaag 707  Q
    ||||| || ||||| || |||||||| || ||||||||||||| | | | |||||| |||| ||| ||||||||||| || ||||||||||||||||| |    
T  44684431 gaaattgttgatgacattaaggtgctctcttggaattgggcgattacaaaacttaagagtcctccctgcctcttttatgagtggtgttggaaccccaagg 44684530  T
Q  708 aatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttg 757  Q
    ||||| |  | ||  |||||||| ||||| ||||||||  ||||||||||    
T  44684531 aatgcttgctccgacaggtggggtagttttagaggtgtctgggacttttg 44684580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 708
Target Start/End: Complemental strand, 25967925 - 25967870
Alignment:
Q  653 tctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaaga 708  Q
    |||||| | ||||||| |||||||||||||||||| ||| | ||||||||||||||    
T  25967925 tctagattaaaaagtcctccttgcctcttttacgagtggagctggaaccccaaaga 25967870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 673 - 707
Target Start/End: Complemental strand, 3578077 - 3578043
Alignment:
Q  673 ttgcctcttttacgattggtgttggaaccccaaag 707  Q
    ||||||||||||||| |||||||||||||||||||    
T  3578077 ttgcctcttttacgagtggtgttggaaccccaaag 3578043  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 626 - 757
Target Start/End: Original strand, 51361250 - 51361381
Alignment:
Q  626 aaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttagg 725  Q
    |||||||||| |||||||||| ||  | ||||||| ||||||  ||| ||||||| ||| || ||||||||||||||||| |||||||| ||| | |||     
T  51361250 aaggtgcttttgtggaattggacggttactagactcaaaagttctccctgcctctattatgagtggtgttggaaccccaaggaatgcctattgagatagt 51361349  T
Q  726 tggggaagtttcagaggtgttagggacttttg 757  Q
    ||||| ||||| |||||||| |||||||||||    
T  51361350 tggggtagttttagaggtgtcagggacttttg 51361381  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 607 - 755
Target Start/End: Complemental strand, 42629143 - 42628995
Alignment:
Q  607 tgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaa 706  Q
    |||||| || ||||| || | ||||||||||||||||||||||  | ||||||| ||||||| ||| ||||||| ||| || |||||| ||||||||||     
T  42629143 tgaaattgttgatgaaattatggtgctttcgtggaattgggcggttactagactgaaaagtcctccctgcctctattatgagtggtgtcggaaccccaag 42629044  T
Q  707 gaatgccttttgcgttaggtggggaagtttcagaggtgttagggacttt 755  Q
    ||||| ||| || | ||| ||||| ||||| ||||| ||  ||||||||    
T  42629043 gaatgtcttctgagatagttggggtagttttagaggcgtccgggacttt 42628995  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 626 - 704
Target Start/End: Complemental strand, 3678360 - 3678282
Alignment:
Q  626 aaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaacccca 704  Q
    |||||| ||||||||||||||| || | |||||||||| |||| ||||||||||| |||| | | ||||||||||||||    
T  3678360 aaggtgatttcgtggaattgggtgattactagacttaagagtcctccttgcctctattacaagttgtgttggaacccca 3678282  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 607 - 705
Target Start/End: Complemental strand, 2756446 - 2756348
Alignment:
Q  607 tgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaa 705  Q
    |||||| || ||||| || |||||||||||||||||||||  |  ||||||||| || || | ||| ||||| | |||||| |||||||||||||||||    
T  2756446 tgaaattgttgatgagattaaggtgctttcgtggaattggatggtttctagactaaagaggcctccgtgcctttattacgagtggtgttggaaccccaa 2756348  T

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Target: scaffold0691 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 608 - 757
Target Start/End: Original strand, 1138 - 1287
Alignment:
Q  608 gaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaag 707  Q
    ||||| || ||||| || ||||||||  | ||||||||||||| | | |||||||| |||| ||| ||||||||||| || ||||||||||| ||||| |    
T  1138 gaaattgttgatgacattaaggtgctcccttggaattgggcgattacaagacttaagagtcctccctgcctcttttatgagtggtgttggaagcccaagg 1237  T
Q  708 aatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttg 757  Q
    ||||| |  | ||  |||||||| ||||| ||||||||  ||||||||||    
T  1238 aatgcttgctccgacaggtggggtagttttagaggtgtccgggacttttg 1287  T

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