View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1725-Insertion-5 (Length: 922)

Name: NF1725-Insertion-5
Description: NF1725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1725-Insertion-5
NF1725-Insertion-5
[»] chr6 (49 HSPs)
chr6 (90-922)||(5383459-5384291)
chr6 (536-922)||(5426043-5426438)
chr6 (631-913)||(5157285-5157567)
chr6 (690-922)||(5066410-5066642)
chr6 (633-922)||(5128076-5128365)
chr6 (536-922)||(5350527-5350916)
chr6 (661-915)||(5370711-5370965)
chr6 (660-915)||(5096848-5097103)
chr6 (667-913)||(5102307-5102553)
chr6 (667-873)||(5137359-5137565)
chr6 (643-922)||(5073577-5073856)
chr6 (696-914)||(5689881-5690099)
chr6 (790-913)||(5354430-5354553)
chr6 (43-252)||(5100957-5101175)
chr6 (24-252)||(5448547-5448784)
chr6 (638-805)||(5447831-5447998)
chr6 (40-241)||(5438960-5439170)
chr6 (24-252)||(5136039-5136276)
chr6 (696-922)||(5278699-5278928)
chr6 (632-913)||(5397092-5397373)
chr6 (825-913)||(5181778-5181866)
chr6 (696-922)||(5176872-5177101)
chr6 (24-98)||(5351501-5351575)
chr6 (536-605)||(5397466-5397535)
chr6 (129-252)||(5353097-5353220)
chr6 (32-98)||(5372198-5372264)
chr6 (40-98)||(5398147-5398205)
chr6 (32-252)||(23127438-23127667)
chr6 (40-98)||(5098312-5098370)
chr6 (40-98)||(5156149-5156207)
chr6 (40-98)||(5180910-5180968)
chr6 (40-98)||(5334279-5334337)
chr6 (43-88)||(5242651-5242696)
chr6 (696-913)||(5345003-5345220)
chr6 (536-605)||(5354110-5354179)
chr6 (775-913)||(5243714-5243852)
chr6 (847-913)||(5434177-5434243)
chr6 (40-89)||(5283357-5283406)
chr6 (661-765)||(2938382-2938486)
chr6 (43-119)||(5126768-5126844)
chr6 (128-252)||(5156246-5156370)
chr6 (43-103)||(5353002-5353062)
chr6 (40-88)||(5427011-5427059)
chr6 (58-89)||(5256265-5256296)
chr6 (40-82)||(2939028-2939070)
chr6 (158-252)||(5242778-5242872)
chr6 (536-605)||(5097197-5097266)
chr6 (43-116)||(5124582-5124655)
chr6 (536-629)||(5157151-5157244)
[»] scaffold0294 (2 HSPs)
scaffold0294 (401-922)||(8338-8848)
scaffold0294 (8-357)||(7981-8335)
[»] chr7 (2 HSPs)
chr7 (525-922)||(36213371-36213777)
chr7 (43-121)||(36213060-36213138)
[»] chr5 (2 HSPs)
chr5 (717-922)||(8877742-8877947)
chr5 (536-605)||(8878116-8878185)
[»] chr3 (8 HSPs)
chr3 (33-239)||(47985522-47985737)
chr3 (33-239)||(47994809-47995024)
chr3 (33-239)||(48004096-48004311)
chr3 (33-239)||(48013381-48013596)
chr3 (841-922)||(47986739-47986820)
chr3 (841-922)||(47996026-47996107)
chr3 (841-922)||(48005313-48005394)
chr3 (841-922)||(48014598-48014679)
[»] chr4 (7 HSPs)
chr4 (843-913)||(4123808-4123878)
chr4 (852-913)||(4344788-4344849)
chr4 (852-913)||(4361219-4361280)
chr4 (24-115)||(4319422-4319513)
chr4 (857-913)||(4320502-4320558)
chr4 (43-104)||(4346458-4346519)
chr4 (849-912)||(6675846-6675909)
[»] scaffold0286 (1 HSPs)
scaffold0286 (13-78)||(7929-7994)


Alignment Details
Target: chr6 (Bit Score: 707; Significance: 0; HSPs: 49)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 90 - 922
Target Start/End: Complemental strand, 5384291 - 5383459
Alignment:
Q  90 atttttaagaccatccggtgttatgttatctgcagtggcaatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaa 189  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5384291 atttttaagaccatccggtgttatgttatccgcagtggcaatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaa 5384192  T
Q  190 gaaccgtcacaatggaagcttaaccagtttggataactatcacccgggagaacacaaccaccatgcatactctgtgcaaggacaaaagggtcagaattta 289  Q
    ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5384191 gaaccgtcacatttgaagcttaaccagtttggataactatcacctgggagaacacaaccaccacgcatactctgtgcaaggacaaaagggtcagaattta 5384092  T
Q  290 atcgaacaatgtattcgttggatcaaaagtggaacctaaaaatcagagggtcatcacattggactaaacgcaaccacataagtggattaaagacatatgt 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5384091 atcgaacaatgtattcgttggatcaaaagtggaacctaaaaatcagagggtcatcacattggactaaacacaaccacataagtggattaaagacatatgt 5383992  T
Q  390 tcagcccaaaccttaaggcatgggatatatggtcccaccacttatatgtagttcaactatcactcacatttttatcca--atgagacttcttacttacat 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||  ||||||   |||||||||||    
T  5383991 tcagcccaaaccttaaggcatgggatatatggtcccaccacttatatgtagctcaactatcagtcacatttttatccaatatgaga---cttacttacat 5383895  T
Q  488 ttgacagactaacaatattaacaattaaacgcacaaa-gagaatgagtgaaacctgtaagatttgctctttcagaatatttgcaacttgacaattcattc 586  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  5383894 ttgacagactaacaatattaacaattaaatgcacaaaggagaatgagtgaaacctgtaagatttgatctttcagaatatttgcaatttgacaattcattc 5383795  T
Q  587 ccatttgaatgaaaagagatttggagggatttcttgatacttgcgtagttggttccaattctttagaatttgcggcatataaggcttccaaaataattgc 686  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5383794 ccatttgaatgaaaagagatttggagggatttcttgatacttgtgtagatggttccaattctttagaatttgcggcatataaggcttccaaaataattgc 5383695  T
Q  687 agtatcatgagaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactacta 786  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  5383694 agcatcatgagaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatgataggtcatgggaactacta 5383595  T
Q  787 cgtggtacatctaaaggaacatgagatgacatgatagtagatgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatg 886  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||||    
T  5383594 cgtggtacatcgaaaggaacatgagatgacatgatagctgatgtttgaaaatggaatgggagattatttgttgaggacatccaagacttaatgatggatg 5383495  T
Q  887 gaaacacatcacgtgagaatccttcatgggcgcaca 922  Q
    ||||||||||||||||||||||||||||| ||||||    
T  5383494 gaaacacatcacgtgagaatccttcatggccgcaca 5383459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 536 - 922
Target Start/End: Complemental strand, 5426438 - 5426043
Alignment:
Q  536 aaacctgtaagatttgctctttcagaatatttgcaacttgacaattcattcccatttgaatgaaaagagatttggagggatttcttgatacttgcg---- 631  Q
    |||||||||| |||  ||||||||||||||  |   |||| ||||||||||| |||||||| |||||||||||  ||| || | |||||||||| |        
T  5426438 aaacctgtaaaattatctctttcagaatatcagaggcttggcaattcattccaatttgaattaaaagagattttaaggaatgttttgatacttgggatgt 5426339  T
Q  632 -----tagttggttccaattctttagaatttgcggcatataaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacc 726  Q
         ||||||||||||| || ||| || ||| |||||| ||||| || ||||| ||||| | ||||||||||| ||||||||| ||||| |||| ||||    
T  5426338 agcagtagttggttccaactccttataacttgtggcatacaaggcatctaaaattattgctgcatcatgagaaagttgaagttctgagctgcactccacc 5426239  T
Q  727 caaagactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtacatctaaaggaacatgagatgacatgatagtag 826  Q
    ||||| ||  ||| | |||||||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||  ||    
T  5426238 caaagcctttgaagatttggaaggtactgggaaatcgatgatagttcctgggaattactatgtggtacatctaaaggaacaagagatgacatgatatcag 5426139  T
Q  827 atgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatgggcgcaca 922  Q
    ||||||||||  |||||||||||||||||||||| ||||||| ||||  |||||| | |||||||||||||||||| |||||||||| | ||||||    
T  5426138 atgtttgaaatggggatgggagattatttgttggtgacatccaagaccaaatgatcgctggaaacacatcacgtgaaaatccttcatagccgcaca 5426043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 631 - 913
Target Start/End: Original strand, 5157285 - 5157567
Alignment:
Q  631 gtagttggttccaattctttagaatttgcggcatataaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacccaaa 730  Q
    |||||||||||||| |  |||||||||| |||||| | ||| |||||||| ||||| | ||||||||||| ||||||||||||||| |||| |||||| |    
T  5157285 gtagttggttccaaattcttagaatttgtggcatacagggcatccaaaattattgctgcatcatgagaaagttgaagttccgagctgcactccacccata 5157384  T
Q  731 gactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtacatctaaaggaacatgagatgacatgatagtagatgt 830  Q
    |||| |||| |||||||||  ||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||  || ||||||    
T  5157385 gacttcgaagacttggaagacactgggaaatcgatgatagttcctgggaattactatgtggtacatctaaaggaacaagagatgacatggcagcagatgt 5157484  T
Q  831 ttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcat 913  Q
    ||||||  | |||||||||||||||||||| ||||||| ||||  |||||||||||||||||||||||| || ||||||||||    
T  5157485 ttgaaatggagatgggagattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgagaaaatccttcat 5157567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 690 - 922
Target Start/End: Original strand, 5066410 - 5066642
Alignment:
Q  690 atcatgagaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgt 789  Q
    ||||| ||||| |||| |||| || || |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||    
T  5066410 atcattagaaagttgatgttctgaactgcactccacccaaagacttcgaagacttggaaggtacttggaaattgatgatagttcatgggagctactatgt 5066509  T
Q  790 ggtacatctaaaggaacatgagatgacatgatagtagatgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaa 889  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||  |||||||||||||||||||||| ||||||| ||||  ||||||||||||||    
T  5066510 ggtacatctaaaggaacaagagatggcatgatagtagatgtttgaaatagggatgggagattatttgttggtgacatccaagacaaaatgatagatggaa 5066609  T
Q  890 acacatcacgtgagaatccttcatgggcgcaca 922  Q
    |||||||||| ||||||||||||| | ||||||    
T  5066610 acacatcacgcgagaatccttcatagccgcaca 5066642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 633 - 922
Target Start/End: Original strand, 5128076 - 5128365
Alignment:
Q  633 agttggttccaattctttagaatttgcggcatataaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacccaaaga 732  Q
    |||| ||||||| || ||| |||||| |||||| ||||| |||||||| ||||| | ||||||||||| ||||||||| ||||| |||| || |||||||    
T  5128076 agtttgttccaactccttataatttgtggcatacaaggcatccaaaattattgctgcatcatgagaaagttgaagttctgagctgcactccatccaaaga 5128175  T
Q  733 ctgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtacatctaaaggaacatgagatgacatgatagtagatgttt 832  Q
    || |||| |||||||||||||| ||| || || |||||||| |||||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||    
T  5128176 cttcgaagacttggaaggtactgggacatcgacgatagttcgtgggaactactatgtggtacatctagaggaacaagagatgacatgatattagatgttt 5128275  T
Q  833 gaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatgggcgcaca 922  Q
    ||||  ||| |||||||| ||||||||| ||||||| ||||   |||||||||||||||||||||| ||| |||||||||||| ||||||    
T  5128276 gaaataggggtgggagatcatttgttggtgacatccaagaccagatgatagatggaaacacatcacttgaaaatccttcatggccgcaca 5128365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 536 - 922
Target Start/End: Complemental strand, 5350916 - 5350527
Alignment:
Q  536 aaacctgtaagatttgctctttcagaatatttgcaacttgacaattcattcccatttgaatgaaaagagatttggagggatttcttgatactt------- 628  Q
    |||||||||| |||  ||||||||||||||| |   |||| ||||||||||| |||||||| |||||||| ||  ||| || | |||||||||           
T  5350916 aaacctgtaaaattatctctttcagaatattagtggcttggcaattcattccaatttgaattaaaagagacttcaaggaatgttttgatacttttgatgt 5350817  T
Q  629 -gc-gtagttggttccaattctttagaatttgcggcatataaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacc 726  Q
     || ||||||| |||||| || ||| |||||| |||||| ||||| |||||||| ||||| | ||||||||||| |||||||||||||||||||| |||     
T  5350816 agctgtagttgattccaactccttataatttgtggcatacaaggcatccaaaattattgctgcatcatgagaaagttgaagttccgagctacactccaca 5350717  T
Q  727 caaagactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtacatctaaaggaacatgagatgacatgatagtag 826  Q
    ||||||||  ||| |||||||||  ||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||   ||    
T  5350716 caaagactttgaagacttggaagacactgggaaatcgatgatagttcctgggaactactatgtggtacatctaaaggaacaagagatgacatgatgtcag 5350617  T
Q  827 atgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatgggcgcaca 922  Q
    ||||||||||  |||||||| ||||||||||||| ||||||| ||| | ||||||      ||||||||||||||| |||||||||| | ||||||    
T  5350616 atgtttgaaatggggatgggtgattatttgttggtgacatccaagaatgaatgat------aaacacatcacgtgaaaatccttcatagccgcaca 5350527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 661 - 915
Target Start/End: Complemental strand, 5370965 - 5370711
Alignment:
Q  661 gcatataaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaa 760  Q
    ||||||||| | ||||||||  |||| | ||||||||||| |||||||||||||||||| | |||||||||||| |||| | |||||||||||||| |||    
T  5370965 gcatataagacatccaaaattgttgctgcatcatgagaaagttgaagttccgagctacattccacccaaagacttcgaagaattggaaggtacttgaaaa 5370866  T
Q  761 ttgatgatagttcctgggaactactacgtggtacatctaaaggaacatgagatgacatgatagtagatgtttgaaaatgggatgggagattatttgttgg 860  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| ||| || ||||||||||  ||| |||||||| |||||||||    
T  5370865 ttgatgatagttcatgggaactactatgtggtacatctaaaggaacaagagatgacatcatattacatgtttgaaataggggtgggagataatttgttgg 5370766  T
Q  861 ggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatgg 915  Q
     ||||||| ||||  ||||||||||||||| |||||| |||| |||||| |||||    
T  5370765 tgacatccaagaccaaatgatagatggaaaaacatcatgtgaaaatcctacatgg 5370711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 660 - 915
Target Start/End: Complemental strand, 5097103 - 5096848
Alignment:
Q  660 ggcatataaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaa 759  Q
    |||||||||||| |||||||| ||||||| ||||||||||| ||||||||| ||||| |||| |||||||||||| |||| |||||||||||||||||||    
T  5097103 ggcatataaggcatccaaaattattgcagcatcatgagaaagttgaagttctgagctgcactccacccaaagacttcgaagacttggaaggtacttggaa 5097004  T
Q  760 attgatgatagttcctgggaactactacgtggtacatctaaaggaacatgagatgacatgatagtagatgtttgaaaatgggatgggagattatttgttg 859  Q
    || ||| ||||||| ||||||||||||  ||||||||||| || |||| | |||||||||| | ||||||||||||   |||||| ||||||||||||||    
T  5097003 atcgataatagttcatgggaactactatttggtacatctacagaaacaagggatgacatgacattagatgtttgaactagggatgagagattatttgttg 5096904  T
Q  860 gggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatgg 915  Q
    | |||| || ||||   |||||||| ||||||||||||||||| ||||||||||||    
T  5096903 gtgacaaccaagaccagatgatagacggaaacacatcacgtgaaaatccttcatgg 5096848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 667 - 913
Target Start/End: Original strand, 5102307 - 5102553
Alignment:
Q  667 aaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatg 766  Q
    ||||| |||||||| ||||| | ||||||||||| |||| |||| || || |||| |||||||||||| |||| | ||||||||||| ||||||| ||||    
T  5102307 aaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagatttggaaggtacatggaaatcgatg 5102406  T
Q  767 atagttcctgggaactactacgtggtacatctaaaggaacatgagatgacatgatagtagatgtttgaaaatgggatgggagattatttgttggggacat 866  Q
    ||||||| |||||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||  ||| ||| |||||||||||||| |||||    
T  5102407 atagttcgtgggaactactatgtggtacatctagaggaacaagagatgacatgatattagatgtttgaaataggggtggaagattatttgttggtgacat 5102506  T
Q  867 ccgagacttaatgatagatggaaacacatcacgtgagaatccttcat 913  Q
    || ||||   ||||||||||||||||||||| |||| | ||||||||    
T  5102507 ccaagaccagatgatagatggaaacacatcatgtgaaagtccttcat 5102553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 667 - 873
Target Start/End: Original strand, 5137359 - 5137565
Alignment:
Q  667 aaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatg 766  Q
    ||||| |||||||| ||||| | ||||||||||| |||| |||| || || |||| |||||||||||| |||| |||||||||||||  | |||| ||||    
T  5137359 aaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggtacacgaaaatcgatg 5137458  T
Q  767 atagttcctgggaactactacgtggtacatctaaaggaacatgagatgacatgatagtagatgtttgaaaatgggatgggagattatttgttggggacat 866  Q
    ||||||| |||||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||  ||| |||||||||||||||||| |||||    
T  5137459 atagttcgtgggaactactatgtggtacatctagaggaacaagagatgacatgatattagatgtttgaaataggggtgggagattatttgttggtgacat 5137558  T
Q  867 ccgagac 873  Q
    || ||||    
T  5137559 ccaagac 5137565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 643 - 922
Target Start/End: Original strand, 5073577 - 5073856
Alignment:
Q  643 aattctttagaatttgcggcatataaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacccaaagactgcgaatac 742  Q
    |||||||||||||||| |||||||||||| ||||||||  || | | ||| ||||||| ||||||||  || |  || | |||||||||||  ||||  |    
T  5073577 aattctttagaatttgtggcatataaggcatccaaaattctttctgcatcttgagaaagttgaagttttgatccgcattccacccaaagacatcgaagcc 5073676  T
Q  743 ttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtacatctaaaggaacatgagatgacatgatagtagatgtttgaaaatggga 842  Q
     ||||||||| |||||||| ||||||||||| ||||||||||||  | ||||||||||||||||||| ||||||||   || |   || |||||  ||||    
T  5073677 atggaaggtaattggaaatagatgatagttcatgggaactactatttagtacatctaaaggaacatgggatgacattgcagcaaccgtctgaaatgggga 5073776  T
Q  843 tgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatgggcgcaca 922  Q
     | |||||||||||| || ||||||| ||||  |||||| ||||| ||||||||||||||||||||||||| | ||||||    
T  5073777 agtgagattatttgtcggtgacatccaagaccaaatgatcgatgggaacacatcacgtgagaatccttcatagccgcaca 5073856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 696 - 914
Target Start/End: Original strand, 5689881 - 5690099
Alignment:
Q  696 agaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtaca 795  Q
    ||||| ||||||||| || | |||||  ||||| ||||| ||||  |||| |||||  |||||||| ||||| |||||||| |||||||||| ||||| |    
T  5689881 agaaagttgaagttctgaaccacactctacccatagacttcgaagccttgaaaggtggttggaaatagatgacagttcctgagaactactacatggtata 5689980  T
Q  796 tctaaaggaacatgagatgacatgatagtagatgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaacacat 895  Q
    ||||||| |||| |||||||||||  || |||||||| |||  ||||||  |||  | ||||||| ||||||| ||||  ||||||||||||||| | ||    
T  5689981 tctaaagaaacaagagatgacatggcagcagatgtttcaaagggggatgaaagagcacttgttggtgacatccaagaccaaatgatagatggaaatatat 5690080  T
Q  896 cacgtgagaatccttcatg 914  Q
    |||||||||||||||||||    
T  5690081 cacgtgagaatccttcatg 5690099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 790 - 913
Target Start/End: Original strand, 5354430 - 5354553
Alignment:
Q  790 ggtacatctaaaggaacatgagatgacatgatagtagatgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaa 889  Q
    |||||||| |||| |||| |||||||||||  || ||||||||||||  | ||| |||||||||||||||| ||||||| ||||  ||||||||||||||    
T  5354430 ggtacatcaaaagaaacaagagatgacatggcagcagatgtttgaaatggagatcggagattatttgttggtgacatccaagaccaaatgatagatggaa 5354529  T
Q  890 acacatcacgtgagaatccttcat 913  Q
    ||||||||||||||||||||||||    
T  5354530 acacatcacgtgagaatccttcat 5354553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 43 - 252
Target Start/End: Original strand, 5100957 - 5101175
Alignment:
Q  43 ctcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgttatctgcagt---------ggcaatgc 133  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||   | ||||||||||||||  ||         | ||||||    
T  5100957 ctcttatagagctgaatggtggcctttgtgtaatttttcactaacacatttttaaggccacttgatgttatgttatctggggttgaagtatagacaatgc 5101056  T
Q  134 acatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaaccagtttggataactatcacc 233  Q
    |||||| || ||| |||||| || |||||||||||||| | |  ||| ||||||||||||| ||  || | ||| ||||||| |||||||||||||||||    
T  5101057 acatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttccgaaagaaaggttaaccaatttggataactatcacc 5101156  T
Q  234 cgggagaacacaaccacca 252  Q
     || || | ||||||||||    
T  5101157 aggaagcaaacaaccacca 5101175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 5448784 - 5448547
Alignment:
Q  24 aaaggaagctaatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgttatctgca 123  Q
    ||||||| ||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||   | |||||  |||||||      
T  5448784 aaaggaaactaatgtctcactcttatagatttgaatggtagcctttgtgtaatttttcaccaacacatttttaaggccactagatgttacattatctggg 5448685  T
Q  124 gt---------ggcaatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaacc 214  Q
    ||         | ||||||||||||||||| | || | | ||||||||||||||||| | | |||| ||||||||||||| ||| |||  ||| ||||||    
T  5448684 gttgaagtatagacaatgcacatcaatgacgtcaattgacgctcttccacttgagggacttcaaaagttacagaagaaccttcagaattaaaggttaacc 5448585  T
Q  215 agtttggataactatcacccgggagaacacaaccacca 252  Q
    | | ||||||||||||||| || || | ||||||||||    
T  5448584 aatctggataactatcaccgggaaggaaacaaccacca 5448547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 638 - 805
Target Start/End: Complemental strand, 5447998 - 5447831
Alignment:
Q  638 gttccaattctttagaatttgcggcatataaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacccaaagactgcg 737  Q
    ||||||| || ||| |||||| |||||| || || |||||||| ||||| |  |||||||||| ||||||||| |||||  ||| |||||||||||| ||    
T  5447998 gttccaactccttataatttgtggcatacaaagcatccaaaattattgctgcctcatgagaaagttgaagttctgagctgaactgcacccaaagacttcg 5447899  T
Q  738 aatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtacatctaaaggaa 805  Q
    || |||||| ||||||| |||||  |||||||||||||| ||||||||  ||||||||||| ||||||    
T  5447898 aagacttggtaggtactgggaaaacgatgatagttcctgagaactactgtgtggtacatctgaaggaa 5447831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 5439170 - 5438960
Alignment:
Q  40 tcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgttatctgcagtgg---------caa 130  Q
    ||||||||||||| |||||||||||||||||||| |||| |||| || |||||| |||| | ||| | |||||||||||| | ||| |         |||    
T  5439170 tcactcttatagagctgaatggtggcctttgtgtgatttatcaccaatacatttataaggctatctgatgttatgttatccggagttgaagaatagacaa 5439071  T
Q  131 tgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaaccagtttggataactatc 230  Q
    |||||||||||||| | || ||| || |||||||||||||| | | |||| ||||||||||||| ||| |||  ||| ||||||| ||||||||||||||    
T  5439070 tgcacatcaatgacatcaaattacgcccttccacttgagggacttgaaaagttacagaagaaccttcagaattaaaggttaaccaatttggataactatc 5438971  T
Q  231 acccgggagaa 241  Q
    ||| |||||||    
T  5438970 accggggagaa 5438960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 24 - 252
Target Start/End: Original strand, 5136039 - 5136276
Alignment:
Q  24 aaaggaagctaatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgttatctgca 123  Q
    |||||| ||||||| ||| ||||| |||| ||||||||||||||||||||||||||| || |||||||||||||| |||   | ||||||||||||||      
T  5136039 aaaggaggctaatgcttcgctcttgtagagctgaatggtggcctttgtgtaattttttaccaacacatttttaaggccacttgatgttatgttatctggg 5136138  T
Q  124 gt---------ggcaatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaacc 214  Q
    ||         | |||||||||||| || ||| |||||| || |||||||||||||| | |  ||| ||||||||||||| ||  || | ||| ||||||    
T  5136139 gttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttccgaaagaaaggttaacc 5136238  T
Q  215 agtttggataactatcacccgggagaacacaaccacca 252  Q
    | ||||||||||||||||| || || | ||||||||||    
T  5136239 aatttggataactatcaccaggaagcaaacaaccacca 5136276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 696 - 922
Target Start/End: Complemental strand, 5278928 - 5278699
Alignment:
Q  696 agaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtaca 795  Q
    ||||| ||||||||| || | |||||  ||||| ||||| ||||  |||| |||||  | |||||| ||||| |||||||| ||||||||| |||||| |    
T  5278928 agaaagttgaagttctgaaccacactctacccatagacttcgaagccttgaaaggtggtcggaaatagatgacagttcctgagaactactatgtggtata 5278829  T
Q  796 tctaaaggaacatgagatgacatgat---agtagatgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaaca 892  Q
    ||||||| |||| ||||||| ||  |   || ||||||||||||  ||||||  |||  | ||||||| ||||||| ||||  |||||| |||||||| |    
T  5278828 tctaaagaaacaagagatgaaatattggcagaagatgtttgaaagggggatgaaagagaacttgttggtgacatccaagaccaaatgattgatggaaata 5278729  T
Q  893 catcacgtgagaatccttcatgggcgcaca 922  Q
     |||||||||||||||||||| | ||||||    
T  5278728 tatcacgtgagaatccttcatagccgcaca 5278699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 632 - 913
Target Start/End: Complemental strand, 5397373 - 5397092
Alignment:
Q  632 tagttggttccaattctttagaatttgcggcatataaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacccaaag 731  Q
    |||||| ||||||||||||||||||||  ||| |||  || |||||||| |||   | |||| |||||| ||||  ||| ||  | || | ||| |||||    
T  5397373 tagttgattccaattctttagaatttgtagcacatagagcatccaaaattatttttgcatcaagagaaagttgatcttcagaattgcaatccacgcaaag 5397274  T
Q  732 actgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtacatctaaaggaacatgagatgacatgatagtagatgtt 831  Q
    ||| ||||  |||||||| |  || ||||  ||||||||||| || |||||||||| || ||| | ||||| || | |||||||||||  || |||||||    
T  5397273 acttcgaagccttggaagttgtttcgaaaaagatgatagttcgtgcgaactactacttgttacgtgtaaagaaataagagatgacatggcagcagatgtt 5397174  T
Q  832 tgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcat 913  Q
    |||||  |  ||||||| ||| ||||||| ||||||| ||||  |||||||| ||||||||| |||| ||| ||||||||||    
T  5397173 tgaaatggaaatgggaggttaattgttggtgacatccaagacgaaatgatagctggaaacacttcacatgaaaatccttcat 5397092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 825 - 913
Target Start/End: Original strand, 5181778 - 5181866
Alignment:
Q  825 agatgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcat 913  Q
    ||||||||||||  ||||||||||||||||||| || ||||||| ||||  |||||| | ||||||||||||| |||||||||||||||    
T  5181778 agatgtttgaaatggggatgggagattatttgtcggtgacatccaagaccaaatgatcgctggaaacacatcatgtgagaatccttcat 5181866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 696 - 922
Target Start/End: Complemental strand, 5177101 - 5176872
Alignment:
Q  696 agaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtaca 795  Q
    ||||| ||||||||| || | |||||  ||||| ||||| ||||  |||| |||||  | |||||| ||||| |||||||| ||||||||| |||||| |    
T  5177101 agaaagttgaagttctgaaccacactctacccatagacttcgaagccttgaaaggtggtcggaaatagatgacagttcctgagaactactatgtggtata 5177002  T
Q  796 tctaaaggaacatgagatgacatgat---agtagatgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaaca 892  Q
    ||||||| |||  ||||||| ||  |   || ||||||||||||  ||||||  |||  | ||||||| ||||||| ||||  |||||| |||||||| |    
T  5177001 tctaaagaaacgagagatgaaatattggcagaagatgtttgaaagggggatgaaagagaacttgttggtgacatccaagaccaaatgattgatggaaata 5176902  T
Q  893 catcacgtgagaatccttcatgggcgcaca 922  Q
     |||||||||||||||||||| | ||||||    
T  5176901 tatcacgtgagaatccttcatagccgcaca 5176872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 5351575 - 5351501
Alignment:
Q  24 aaaggaagctaatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaag 98  Q
    ||||||| ||||||  ||||||||||||| | |||||||||||||||||||||||||||||||||  ||||||||    
T  5351575 aaaggaaactaatgcctcactcttatagagccgaatggtggcctttgtgtaatttttcactaacatgtttttaag 5351501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 536 - 605
Target Start/End: Complemental strand, 5397535 - 5397466
Alignment:
Q  536 aaacctgtaagatttgctctttcagaatatttgcaacttgacaattcattcccatttgaatgaaaagaga 605  Q
    |||||||||| |||  ||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  5397535 aaacctgtaaaattatctctttcagaatattggcaacttgacaattcgttcccatttgaattaaaagaga 5397466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 252
Target Start/End: Original strand, 5353097 - 5353220
Alignment:
Q  129 aatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaaccagtttggataacta 228  Q
    ||||||||||| || ||| |||||| || |||||||  ||||| | | |||| ||||||||||||| ||| | | |||| ||||||| ||||||||||||    
T  5353097 aatgcacatcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggataacta 5353196  T
Q  229 tcacccgggagaacacaaccacca 252  Q
    ||||| ||||| | ||||||||||    
T  5353197 tcaccagggaggaaacaaccacca 5353220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 5372264 - 5372198
Alignment:
Q  32 ctaatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaag 98  Q
    |||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||  ||||||||    
T  5372264 ctaatgcttcactcttataaagctgaatggtggcctttgtgtaatttttcaataacatgtttttaag 5372198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 5398205 - 5398147
Alignment:
Q  40 tcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaag 98  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||  ||||||||    
T  5398205 tcactcttatagagctgaatggtggcctttgtgtaatttatcactaacatgtttttaag 5398147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 252
Target Start/End: Original strand, 23127438 - 23127667
Alignment:
Q  32 ctaatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgttatctgcagtgg---- 127  Q
    ||||||| || ||||||||||||||||||||  |||||||||||||||| || ||||| |||||||  |||||||  || ||||||||||  || |        
T  23127438 ctaatgtctctctcttatagatctgaatggtaccctttgtgtaattttttaccaacacgtttttaacgccatccgaggtaatgttatctggggttgaagt 23127537  T
Q  128 -----caatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaaccagtttgga 222  Q
         |||  ||||| | || ||| | ||||||| ||||||||||||| || | |||| ||||||||||||| ||| ||  ||| | |||||||| ||||    
T  23127538 attgacaacacacattattgtcttcacgttatgcccttccacttgaggagcttcaaaacttacagaagaaccttcaaaaccgaaacctaaccagtctgga 23127637  T
Q  223 taactatcacccgggagaacacaaccacca 252  Q
    ||||||||  | | ||||| ||||||||||    
T  23127638 taactatcttcagtgagaaaacaaccacca 23127667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 5098370 - 5098312
Alignment:
Q  40 tcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaag 98  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||  ||||||||    
T  5098370 tcactcttatagagctgaatggtggcctttgtgtggtttttcactaacatgtttttaag 5098312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 5156149 - 5156207
Alignment:
Q  40 tcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaag 98  Q
    ||||||||||| | ||||||||||||||||||||||||||||| |||||  ||||||||    
T  5156149 tcactcttataaagctgaatggtggcctttgtgtaatttttcaataacatgtttttaag 5156207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 5180910 - 5180968
Alignment:
Q  40 tcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaag 98  Q
    ||||||||||||| ||||||||| ||||||||||||||||| |||||||  ||||||||    
T  5180910 tcactcttatagagctgaatggtagcctttgtgtaatttttaactaacatgtttttaag 5180968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 5334337 - 5334279
Alignment:
Q  40 tcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaag 98  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||||  ||||||||    
T  5334337 tcactcttatagagttgaatggtggcctttgtgtaatttatcactaacatgtttttaag 5334279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 5242651 - 5242696
Alignment:
Q  43 ctcttatagatctgaatggtggcctttgtgtaatttttcactaaca 88  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||    
T  5242651 ctcttgtagagctgaatggtggcctttgtgtaatttttcactaaca 5242696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 696 - 913
Target Start/End: Complemental strand, 5345220 - 5345003
Alignment:
Q  696 agaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtaca 795  Q
    ||||| ||| ||||| |||| |||||  ||||| ||||| ||||  |||| |||||  |||||||| | ||| || || ||||| |||||| |||||| |    
T  5345220 agaaagttgtagttctgagccacactctacccatagacttcgaagccttgaaaggtggttggaaatagttgacagatcttgggagctactatgtggtata 5345121  T
Q  796 tctaaaggaacatgagatgacatgatagtagatgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaacacat 895  Q
    ||||||| |||  ||||||||||   || |||| ||||||  | | |||  |||  | ||||||| ||||||| ||||   |||||||||||||| ||||    
T  5345120 tctaaagaaaccagagatgacatcgcaggagatatttgaacttcgaatgaaagagaacttgttggtgacatccaagaccagatgatagatggaaatacat 5345021  T
Q  896 cacgtgagaatccttcat 913  Q
    | ||||||||||||||||    
T  5345020 cgcgtgagaatccttcat 5345003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 536 - 605
Target Start/End: Original strand, 5354110 - 5354179
Alignment:
Q  536 aaacctgtaagatttgctctttcagaatatttgcaacttgacaattcattcccatttgaatgaaaagaga 605  Q
    ||||||| || |||| ||||||||||||||| |  ||||| |||||||||||||||||||| ||||||||    
T  5354110 aaacctgcaaaattttctctttcagaatattagtgacttggcaattcattcccatttgaattaaaagaga 5354179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 775 - 913
Target Start/End: Original strand, 5243714 - 5243852
Alignment:
Q  775 tgggaactactacgtggtacatctaaaggaacatgagatgacatgatagtagatgtttgaaaatgggatgggagattatttgttggggacatccgagact 874  Q
    ||||| |||||| | |||| |||||||| |||  ||||||||||   || |||||||||||  |||||||  |||  | ||||||| ||||||| ||||     
T  5243714 tgggagctactatgcggtatatctaaagaaaccagagatgacatcgcaggagatgtttgaacttgggatgaaagagaacttgttggtgacatccaagacc 5243813  T
Q  875 taatgatagatggaaacacatcacgtgagaatccttcat 913  Q
      |||||||||||||| ||||| ||||| ||||||||||    
T  5243814 agatgatagatggaaatacatcgcgtgaaaatccttcat 5243852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 847 - 913
Target Start/End: Complemental strand, 5434243 - 5434177
Alignment:
Q  847 agattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcat 913  Q
    |||||||||||||| ||||||| ||||| ||||||| ||||||| | |||  |||||||||||||||    
T  5434243 agattatttgttggtgacatccaagactgaatgataaatggaaataaatcgtgtgagaatccttcat 5434177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 5283357 - 5283406
Alignment:
Q  40 tcactcttatagatctgaatggtggcctttgtgtaatttttcactaacac 89  Q
    ||||| |||||||  || ||||||||||||||||||||||||||||||||    
T  5283357 tcactattatagagttggatggtggcctttgtgtaatttttcactaacac 5283406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 661 - 765
Target Start/End: Complemental strand, 2938486 - 2938382
Alignment:
Q  661 gcatataaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaa 760  Q
    ||||||||| | |||||||   |||| | ||||||||||| ||||| ||| |||| ||| | ||||||||||||  ||| ||||||||||| |||| |||    
T  2938486 gcatataagacatccaaaactgttgctgcatcatgagaaagttgaaattctgagcaacattccacccaaagacttggaagacttggaaggtgcttgaaaa 2938387  T
Q  761 ttgat 765  Q
    |||||    
T  2938386 ttgat 2938382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 5126768 - 5126844
Alignment:
Q  43 ctcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgttatc 119  Q
    ||||||||||  |||||||||||||| |||||||||||||| ||||   || |||| ||||| | ||||||||||||    
T  5126768 ctcttatagagttgaatggtggccttcgtgtaatttttcaccaacaagcttgtaaggccatctgatgttatgttatc 5126844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 252
Target Start/End: Original strand, 5156246 - 5156370
Alignment:
Q  128 caatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaaccagtttggataact 227  Q
    |||||||||||| || ||| |||||| || |||||||||||||  | | |||  | ||||||||||| ||| |||   || ||||||| |||||||||||    
T  5156246 caatgcacatcattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacagaagaaccttcagaattataggttaaccaatttggataact 5156345  T
Q  228 atcacccgggagaacacaaccacca 252  Q
    |||||  ||||| | ||||||||||    
T  5156346 atcactggggaggaaacaaccacca 5156370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 5353002 - 5353062
Alignment:
Q  43 ctcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccat 103  Q
    |||||||| | ||||||||| ||||||||||||||||| |  |||||||||||||| ||||    
T  5353002 ctcttataaagctgaatggtagcctttgtgtaattttttagcaacacatttttaaggccat 5353062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 5427059 - 5427011
Alignment:
Q  40 tcactcttatagatctgaatggtggcctttgtgtaatttttcactaaca 88  Q
    ||||||||||| | ||||||| ||||||||||||||||||||| |||||    
T  5427059 tcactcttataaagctgaatgatggcctttgtgtaatttttcaataaca 5427011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 89
Target Start/End: Original strand, 5256265 - 5256296
Alignment:
Q  58 atggtggcctttgtgtaatttttcactaacac 89  Q
    ||||||||||||||||||||||||||||||||    
T  5256265 atggtggcctttgtgtaatttttcactaacac 5256296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 2939070 - 2939028
Alignment:
Q  40 tcactcttatagatctgaatggtggcctttgtgtaatttttca 82  Q
    ||||||||||||| |||||||||||||||| | ||||||||||    
T  2939070 tcactcttatagagctgaatggtggcctttatataatttttca 2939028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 5242778 - 5242872
Alignment:
Q  158 cttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaaccagtttggataactatcacccgggagaacacaaccacca 252  Q
    |||||||||||||| | | |||| | ||||||||||| ||| ||| |||| ||||||| | ||||||||| ||||| || || | ||||||||||    
T  5242778 cttccacttgagggacttcaaaagtaacagaagaaccttcagaatcgaaggttaaccaatctggataactgtcaccaggaagcaaacaaccacca 5242872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 605
Target Start/End: Complemental strand, 5097266 - 5097197
Alignment:
Q  536 aaacctgtaagatttgctctttcagaatatttgcaacttgacaattcattcccatttgaatgaaaagaga 605  Q
    |||||||||  |||| |||||||| |||||| |  ||||| |||||| ||||||||||||| ||||||||    
T  5097266 aaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagaga 5097197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 5124582 - 5124655
Alignment:
Q  43 ctcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgtt 116  Q
    ||||||||||  ||||||||  |||| |||||||||||||| | |||| ||||||| ||||||| || ||||||    
T  5124582 ctcttatagagttgaatggtccccttcgtgtaatttttcaccatcacagttttaaggccatccgatgctatgtt 5124655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 629
Target Start/End: Original strand, 5157151 - 5157244
Alignment:
Q  536 aaacctgtaagatttgctctttcagaatatttgcaacttgacaattcattcccatttgaatgaaaagagatttggagggatttcttgatacttg 629  Q
    |||||||||| |||   |||||||||||||| |   |||| ||||||||||| |||||||| |||||||| || |||| || | ||||||||||    
T  5157151 aaacctgtaaaattatatctttcagaatattagtggcttggcaattcattccaatttgaattaaaagagacttcgaggaatgttttgatacttg 5157244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 401 - 922
Target Start/End: Original strand, 8338 - 8848
Alignment:
Q  401 cttaaggcatgggatatatggtcccaccacttatatgtagttcaactatcactcacatttttatccaat--gagacttcttact--tacatttgacagac 496  Q
    ||||||||| | |||||||||| |||||||||||| |||  ||||||||||||||||| ||||||||||  |||||||| || |  ||||||||||| ||    
T  8338 cttaaggcaagcgatatatggttccaccacttataagtaactcaactatcactcacatatttatccaatatgagacttcctaatattacatttgacaaac 8437  T
Q  497 taacaatattaacaattaaacgcacaaag-agaatgagtgaaacctgtaagatttgctctttcagaatatttgcaacttgacaattcattcccatttgaa 595  Q
     ||||||||||||||| ||| || ||| | | |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| |||    
T  8438 caacaatattaacaataaaatgcgcaagggaaaatgagtgaaacctgtaaaattagccctttcagaatatttgcaacttgacaattcattcccattggaa 8537  T
Q  596 tgaaaagagatttggagggatttcttgatacttgcgt---agttggttccaattctttagaatttgcggcatataaggcttccaaaataattgcagtatc 692  Q
    |||||||||||||||||| |||||| |||||||| ||   ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        
T  8538 tgaaaagagatttggaggaatttctagatacttgagttgtagttggttccaattctttagaatttgcggcatataaggcatccaaaataattgcaga--- 8634  T
Q  693 atgagaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggt 792  Q
                    || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8635 ----------------tctgagctacacttcacccaaagacttcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggt 8718  T
Q  793 acatctaaaggaacatgagatgacatgatagtagatgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaaca 892  Q
    |||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  8719 acatctaaaggaacatgagatgacatgatagtagatgtttgaaagtaagatgggagattatttgttggagacatccaagacttaatgatagatggaaaca 8818  T
Q  893 catcacgtgagaatccttcatgggcgcaca 922  Q
    ||||||||||||||||||||||| ||||||    
T  8819 catcacgtgagaatccttcatggccgcaca 8848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 7981 - 8335
Alignment:
Q  8 gcttttcctcgtccttaaaggaagctaatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccgg 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7981 gcttttcctcatccttaaaggaagctaatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatctgg 8080  T
Q  108 tgttatgttatctgcagt------ggcaatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaa 201  Q
    |||||||||||| |||||      |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  8081 tgttatgttatccgcagttgaagaggcaatgcacatcaatgactttaagttatgctcttccacttgaggggcattaaaaattacagaagaaccatcacaa 8180  T
Q  202 tggaagcttaaccagtttggataactatcacccgggagaacacaaccaccatgcatactctgtgcaaggacaaaagggtcagaatttaatcgaacaatgt 301  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||| |    
T  8181 ttgaagcttaaccagtttggataactatcacccgggagaacacaaccaccacgcatactctgtgcaagga-aaaagggtcagaatttaatctaacaatat 8279  T
Q  302 attcgttggatcaaaagtggaacctaaaaatcagagggtcatcacattggactaaa 357  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  8280 attctttggatcaaaagtggaacctaaaaatcagggggtcataacattggactaaa 8335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 7e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 525 - 922
Target Start/End: Original strand, 36213371 - 36213777
Alignment:
Q  525 gagaatgagtgaaacctgtaagatttgctctttcagaatatttgcaacttgacaattcattcccatttgaatgaaaagagatttggagggatttcttgat 624  Q
    ||||||||||||||||||||  |||| |||||||| |||||| | || ||| ||||||||||||||||||||||||| ||||||  ||| ||||||||||    
T  36213371 gagaatgagtgaaacctgtacaattttctctttcaaaatattggaaagttggcaattcattcccatttgaatgaaaaaagatttcaaggaatttcttgat 36213470  T
Q  625 acttgcgtagt---------tggttccaattctttagaatttgcggcatataaggcttccaaaataattgcagtatcatgagaaacttgaagttccgagc 715  Q
    |||||||  ||         | |||||||||| ||| |||| | |||||||||||| |||||||| ||| | | ||||||||||| ||||   || ||||    
T  36213471 acttgcgatgtatgtggagctagttccaattccttataattagtggcatataaggcatccaaaattatttctgcatcatgagaaagttgagactctgagc 36213570  T
Q  716 tacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtacatctaaaggaacatgagatga 815  Q
    | |||| |||||||||||| || | ||| ||||||||| | ||||||||||| ||| | |||||| | ||  ||| |||||||| ||||||| |||||||    
T  36213571 tgcactgcacccaaagacttcgtagactcggaaggtacgtcgaaattgatgacagtgcatgggaattgctgtgtgatacatctagaggaacaagagatga 36213670  T
Q  816 catgatagtagatgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatgg 915  Q
    |||||||||||||||||||||  || | ||||||  ||||||||| ||||||| ||||  |||||||||||||||||||||| ||||||||||||||| |    
T  36213671 catgatagtagatgtttgaaatcggaacgggagaacatttgttggtgacatccaagaccaaatgatagatggaaacacatcatgtgagaatccttcatag 36213770  T
Q  916 gcgcaca 922  Q
     ||||||    
T  36213771 ccgcaca 36213777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 36213060 - 36213138
Alignment:
Q  43 ctcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgttatctg 121  Q
    |||||||||||||||||||| |||||||||| |||||| || | ||| |||||||| ||||| | || |||||| ||||    
T  36213060 ctcttatagatctgaatggtagcctttgtgtgattttttaccatcacgtttttaagtccatctgatgctatgttttctg 36213138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 717 - 922
Target Start/End: Complemental strand, 8877947 - 8877742
Alignment:
Q  717 acacttcacccaaagactgcgaatacttggaaggtacttggaaattgatgatagttcctgggaactactacgtggtacatctaaaggaacatgagatgac 816  Q
    ||||| ||| |||||||| |||| || |||||||| ||| || ||||||| |||||  ||||||||||||  |||||||||||||| |||  ||||||||    
T  8877947 acactccactcaaagacttcgaagacctggaaggtgctttgatattgatgctagtttgtgggaactactatatggtacatctaaagaaactagagatgac 8877848  T
Q  817 atgatagtagatgtttgaaaatgggatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatggg 916  Q
    ||  | ||||||||||||||  |||   |   |||||||||||| ||||||| ||||  |||||||||||||||||||||||| || |||||||||| |     
T  8877847 atagtggtagatgtttgaaatgggggctgttaattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgcgaaaatccttcatagc 8877748  T
Q  917 cgcaca 922  Q
    ||||||    
T  8877747 cgcaca 8877742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 605
Target Start/End: Complemental strand, 8878185 - 8878116
Alignment:
Q  536 aaacctgtaagatttgctctttcagaatatttgcaacttgacaattcattcccatttgaatgaaaagaga 605  Q
    |||||||||| |||| |||||||||| |||| |  | ||| |||||||||||||||||||| || |||||    
T  8878185 aaacctgtaaaattttctctttcagagtattagttaattggcaattcattcccatttgaataaatagaga 8878116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 47985522 - 47985737
Alignment:
Q  33 taatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgttatctgcagtgg----- 127  Q
    |||||| |||||||||||||  |||||| ||||  |||||| |||| |||||||||| |||||||| ||||| | |||||||| |||||  || |         
T  47985522 taatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagta 47985621  T
Q  128 ----caatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaaccagtttggat 223  Q
        |||||||||||| || |||||||||||||  ||||||||||||| | | |||| |||| |||||||| ||| |||  ||| ||||||| |||||||    
T  47985622 tagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggat 47985721  T
Q  224 aactatcacccgggag 239  Q
    |||||||||| |||||    
T  47985722 aactatcaccagggag 47985737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 47994809 - 47995024
Alignment:
Q  33 taatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgttatctgcagtgg----- 127  Q
    |||||| |||||||||||||  |||||| ||||  |||||| |||| |||||||||| |||||||| ||||| | |||||||| |||||  || |         
T  47994809 taatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagta 47994908  T
Q  128 ----caatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaaccagtttggat 223  Q
        |||||||||||| || |||||||||||||  ||||||||||||| | | |||| |||| |||||||| ||| |||  ||| ||||||| |||||||    
T  47994909 tagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggat 47995008  T
Q  224 aactatcacccgggag 239  Q
    |||||||||| |||||    
T  47995009 aactatcaccagggag 47995024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 48004096 - 48004311
Alignment:
Q  33 taatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgttatctgcagtgg----- 127  Q
    |||||| |||||||||||||  |||||| ||||  |||||| |||| |||||||||| |||||||| ||||| | |||||||| |||||  || |         
T  48004096 taatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagta 48004195  T
Q  128 ----caatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaaccagtttggat 223  Q
        |||||||||||| || |||||||||||||  ||||||||||||| | | |||| |||| |||||||| ||| |||  ||| ||||||| |||||||    
T  48004196 tagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggat 48004295  T
Q  224 aactatcacccgggag 239  Q
    |||||||||| |||||    
T  48004296 aactatcaccagggag 48004311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 48013381 - 48013596
Alignment:
Q  33 taatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgttatctgcagtgg----- 127  Q
    |||||| |||||||||||||  |||||| ||||  |||||| |||| |||||||||| |||||||| ||||| | |||||||| |||||  || |         
T  48013381 taatgtctcactcttatagagttgaatgatggctcttgtgtgatttatcactaacacgtttttaaggccatctgatgttatgtcatctgaggttgaagta 48013480  T
Q  128 ----caatgcacatcaatgactttaagttatgctcttccacttgaggggccttaaaaattacagaagaaccgtcacaatggaagcttaaccagtttggat 223  Q
        |||||||||||| || |||||||||||||  ||||||||||||| | | |||| |||| |||||||| ||| |||  ||| ||||||| |||||||    
T  48013481 tagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaaccaatttggat 48013580  T
Q  224 aactatcacccgggag 239  Q
    |||||||||| |||||    
T  48013581 aactatcaccagggag 48013596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 841 - 922
Target Start/End: Original strand, 47986739 - 47986820
Alignment:
Q  841 gatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatgggcgcaca 922  Q
    |||| ||||||||||||||| ||||||| ||||  ||||||||||||||||||||||||||| |||||||||| | ||||||    
T  47986739 gatgtgagattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcaca 47986820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 841 - 922
Target Start/End: Original strand, 47996026 - 47996107
Alignment:
Q  841 gatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatgggcgcaca 922  Q
    |||| ||||||||||||||| ||||||| ||||  ||||||||||||||||||||||||||| |||||||||| | ||||||    
T  47996026 gatgtgagattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcaca 47996107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 841 - 922
Target Start/End: Original strand, 48005313 - 48005394
Alignment:
Q  841 gatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatgggcgcaca 922  Q
    |||| ||||||||||||||| ||||||| ||||  ||||||||||||||||||||||||||| |||||||||| | ||||||    
T  48005313 gatgtgagattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcaca 48005394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 841 - 922
Target Start/End: Original strand, 48014598 - 48014679
Alignment:
Q  841 gatgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcatgggcgcaca 922  Q
    |||| ||||||||||||||| ||||||| ||||  ||||||||||||||||||||||||||| |||||||||| | ||||||    
T  48014598 gatgtgagattatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcatagccgcaca 48014679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 843 - 913
Target Start/End: Original strand, 4123808 - 4123878
Alignment:
Q  843 tgggagattatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcat 913  Q
    ||||||||||||||||||  |||||| ||||  ||||||||| |||||||||||||| |||||||||||||    
T  4123808 tgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgagagaatccttcat 4123878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 852 - 913
Target Start/End: Complemental strand, 4344849 - 4344788
Alignment:
Q  852 atttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcat 913  Q
    ||||||||| ||||||| ||||  ||||||||| ||||||||||||||||||||||||||||    
T  4344849 atttgttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcat 4344788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 852 - 913
Target Start/End: Complemental strand, 4361280 - 4361219
Alignment:
Q  852 atttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcat 913  Q
    ||||||||| ||||||| ||||  ||||||||| ||||||||||||||||||||||||||||    
T  4361280 atttgttggtgacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcat 4361219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 4319422 - 4319513
Alignment:
Q  24 aaaggaagctaatgtttcactcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatccggtgttatgt 115  Q
    |||||| | ||||| ||| ||||||||||  |||||||||| |||||||| |||| ||||||||||||||| ||| ||||| | ||||||||    
T  4319422 aaaggaggataatgcttctctcttatagagttgaatggtggtctttgtgtgatttatcactaacacattttcaaggccatctgatgttatgt 4319513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 857 - 913
Target Start/End: Original strand, 4320502 - 4320558
Alignment:
Q  857 ttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttcat 913  Q
    |||| ||||||| ||||  ||||||||| ||||||||||||||||||||||||||||    
T  4320502 ttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcat 4320558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 4346519 - 4346458
Alignment:
Q  43 ctcttatagatctgaatggtggcctttgtgtaatttttcactaacacatttttaagaccatc 104  Q
    ||||||||||  |||||||||| |||||||| |||| |||| |||||||||||||| |||||    
T  4346519 ctcttatagagttgaatggtggtctttgtgtgatttatcaccaacacatttttaaggccatc 4346458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 849 - 912
Target Start/End: Complemental strand, 6675909 - 6675846
Alignment:
Q  849 attatttgttggggacatccgagacttaatgatagatggaaacacatcacgtgagaatccttca 912  Q
    |||||||| ||| ||||||| ||||||||||| ||| ||||| |||||| |||| |||||||||    
T  6675909 attatttgatggtgacatccaagacttaatgagagaaggaaatacatcaagtgaaaatccttca 6675846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 7994 - 7929
Alignment:
Q  13 tcctcgtccttaaaggaagctaatgtttcactcttatagatctgaatggtggcctttgtgtaattt 78  Q
    ||||| |||| |||||| |||||||| || || ||||||  ||||||||| |||||||||||||||    
T  7994 tcctcatcctcaaaggaggctaatgtatctcttttataggcctgaatggttgcctttgtgtaattt 7929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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