View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17250_low_1 (Length: 489)

Name: NF17250_low_1
Description: NF17250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17250_low_1
NF17250_low_1
[»] scaffold0110 (1 HSPs)
scaffold0110 (40-477)||(22292-22723)
[»] chr2 (5 HSPs)
chr2 (46-117)||(41513818-41513889)
chr2 (49-147)||(42510730-42510828)
chr2 (61-147)||(2419942-2420028)
chr2 (52-117)||(33459205-33459270)
chr2 (49-117)||(8951344-8951412)
[»] chr1 (3 HSPs)
chr1 (49-196)||(38474700-38474847)
chr1 (52-117)||(5086049-5086114)
chr1 (52-93)||(48554996-48555037)
[»] chr8 (2 HSPs)
chr8 (46-84)||(37384749-37384787)
chr8 (49-99)||(11567602-11567652)
[»] chr5 (2 HSPs)
chr5 (54-99)||(32811127-32811172)
chr5 (43-99)||(35138557-35138613)
[»] chr4 (1 HSPs)
chr4 (50-93)||(20642377-20642420)
[»] chr3 (1 HSPs)
chr3 (57-89)||(26936828-26936860)


Alignment Details
Target: scaffold0110 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 40 - 477
Target Start/End: Original strand, 22292 - 22723
Alignment:
Q  40 tatggatcagtcaatttagtccctcaaatttgcaaaatagcaattcagtcccttgaattgcaaactatcaatcaatttggtaaattattcaaattttgct 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||  |||||||||||||||||    
T  22292 tatggatcagtcaatttagtccctcaaatttgcaaaatagcaattcagt-------attgcaaactatcaattaatttggtcgattattcaaattttgct 22384  T
Q  140 ccacaattacaacgattctatgctcgctttgatgtagcaaaagactatttaaatcaaaatacatgttatattgttaactgattgatattcttaatttaag 239  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22385 ccacaattagaacgattctatgcttgctttgatgtagcaaaagactatttaaatcaaaatacatgttatatcgttaactgattgatattcttaatttaag 22484  T
Q  240 ggactaatttgttatatcgtataattaaaagactaaattgctcgatctacgtaacttcaaggaccaaaatgcttatttactcattttgtgcaagacg-aa 338  Q
    |||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||    
T  22485 ggactaatttattatatcgttaaattaaaagactaaattgctcgatctacgtaacttcaagaaccaaaatgcttatttactcattttgtggaagacgaaa 22584  T
Q  339 cttaactgcagtttcatataaaatgttggtgttgttatccaactagaaaaacacaaacggcatcataagaacgaagaattgtacctaaattttgtccttt 438  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22585 cttaagtgcagtttcatataaaatgttggtgttgttatccaactagaaaaacacaaacggcatcataagaacgaagaattgtacctaaattttgtcattt 22684  T
Q  439 tagtgtatatttaaggtgtttataaatttccacaggttc 477  Q
    || | ||||||||||||||||||||||||||||||||||    
T  22685 tactatatatttaaggtgtttataaatttccacaggttc 22723  T

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Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 41513818 - 41513889
Alignment:
Q  46 tcagtcaatttagtccctcaaatttgcaaaatagcaattcagtcccttgaattgcaaactatcaatcaattt 117  Q
    |||| ||||||||||| |||||||||||||||||||| | |||||||| ||||| ||| |||||||||||||    
T  41513818 tcagccaatttagtccttcaaatttgcaaaatagcaagttagtcccttaaattgaaaaatatcaatcaattt 41513889  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 42510730 - 42510828
Alignment:
Q  49 gtcaatttagtccctcaaatttgcaaaatagcaattcagtcccttgaattgcaaactatcaatcaatttggtaaattattcaaattttgctccacaatt 147  Q
    ||||||||||||| | |||| ||| |||||| | || |||||||| ||||| ||| | |||| |||||| || |||| |||||||||||| ||||||||    
T  42510730 gtcaatttagtccttgaaatctgcgaaataggagtttagtcccttaaattgaaaaatgtcaaacaatttagtcaatttttcaaattttgcaccacaatt 42510828  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 2420028 - 2419942
Alignment:
Q  61 cctcaaatttgcaaaatagcaattcagtcccttgaattgcaaactatcaatcaatttggtaaattattcaaattttgctccacaatt 147  Q
    |||||||||||  ||||||||||| |||| ||| ||||  ||| ||||||||||||| ||   || |||||||||||| ||||||||    
T  2420028 cctcaaatttgtgaaatagcaatttagtctcttaaatttaaaaatatcaatcaatttagtctttttttcaaattttgcaccacaatt 2419942  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 33459205 - 33459270
Alignment:
Q  52 aatttagtccctcaaatttgcaaaatagcaattcagtcccttgaattgcaaactatcaatcaattt 117  Q
    |||||||| ||||| ||||   |||||||||||||||||||| ||||| ||| ||||||| |||||    
T  33459205 aatttagttcctcatatttttgaaatagcaattcagtcccttaaattgaaaaatatcaattaattt 33459270  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 8951412 - 8951344
Alignment:
Q  49 gtcaatttagtccctcaaatttgcaaaatagcaattcagtcccttgaattgcaaactatcaatcaattt 117  Q
    |||||||||||||  ||||||||  ||||||||| | |||||||| ||||| | | |||||||||||||    
T  8951412 gtcaatttagtcctccaaatttgtgaaatagcaaattagtcccttaaattgaataatatcaatcaattt 8951344  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 38474847 - 38474700
Alignment:
Q  49 gtcaatttagtccctcaaatttgcaaaatagcaattcagtcccttgaattgcaaactatcaatcaatttggtaaattattcaaattttgctccacaatta 148  Q
    ||||||||||||||| |||||||  ||||||||||| |||||||| ||||  ||  |||||||||| |||||  | | || ||| ||||| ||    |||    
T  38474847 gtcaatttagtccctaaaatttgagaaatagcaatttagtcccttaaattaaaacatatcaatcaacttggtccagtttttaaactttgcacctatgtta 38474748  T
Q  149 caacgattctatgctcgctttgatgtagcaaaagactatttaaatcaa 196  Q
     || | || |||||| | ||||||||| ||||||||||||||||||||    
T  38474747 taaaggttgtatgcttgttttgatgtaccaaaagactatttaaatcaa 38474700  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 5086114 - 5086049
Alignment:
Q  52 aatttagtccctcaaatttgcaaaatagcaattcagtcccttgaattgcaaactatcaatcaattt 117  Q
    ||||||||||||||||||| ||||||||||| | ||||| || ||||  | | |||||||||||||    
T  5086114 aatttagtccctcaaatttacaaaatagcaaattagtcctttaaattaaagaatatcaatcaattt 5086049  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 48555037 - 48554996
Alignment:
Q  52 aatttagtccctcaaatttgcaaaatagcaattcagtccctt 93  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||    
T  48555037 aatttagtctctcaaatttgcaaaataacaatttagtccctt 48554996  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 37384749 - 37384787
Alignment:
Q  46 tcagtcaatttagtccctcaaatttgcaaaatagcaatt 84  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  37384749 tcagtcaatttagtccctcaaatttgcaaaattgcaatt 37384787  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 11567602 - 11567652
Alignment:
Q  49 gtcaatttagtccctcaaatttgcaaaatagcaattcagtcccttgaattg 99  Q
    |||||||||||||||||||||| |||||| | |||||| |||||| |||||    
T  11567602 gtcaatttagtccctcaaatttacaaaatggtaattcattcccttaaattg 11567652  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 32811172 - 32811127
Alignment:
Q  54 tttagtccctcaaatttgcaaaatagcaattcagtcccttgaattg 99  Q
    |||||||||||||||||||||||||| |||| |||||||| |||||    
T  32811172 tttagtccctcaaatttgcaaaatagaaatttagtcccttaaattg 32811127  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 35138613 - 35138557
Alignment:
Q  43 ggatcagtcaatttagtccctcaaatttgcaaaatagcaattcagtcccttgaattg 99  Q
    ||||| |||||||||||   |||||||||| ||||||||||| |||||||| |||||    
T  35138613 ggatcggtcaatttagtatttcaaatttgcgaaatagcaatttagtcccttaaattg 35138557  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 20642377 - 20642420
Alignment:
Q  50 tcaatttagtccctcaaatttgcaaaatagcaattcagtccctt 93  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||||    
T  20642377 tcaatttcgtccctcaaatttgcaacatagcaattgagtccctt 20642420  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 26936828 - 26936860
Alignment:
Q  57 agtccctcaaatttgcaaaatagcaattcagtc 89  Q
    ||||||| |||||||||||||||||||||||||    
T  26936828 agtccctgaaatttgcaaaatagcaattcagtc 26936860  T

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