View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17250_low_2 (Length: 375)
Name: NF17250_low_2
Description: NF17250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17250_low_2 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 375
Target Start/End: Original strand, 40274614 - 40274987
Alignment:
| Q |
15 |
aatcatagataaccattacattcatgagtcaaacgcccacttaccccttgcatctaatctcccccctcgttggcctaggataccccttaagggcaaacac |
114 |
Q |
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||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40274614 |
aatcatatataaccattacatttatgagtcaaacgctcacttaccccttgcatgtaatctccctcctcgttggcctaggataccccttaagggcaaacac |
40274713 |
T |
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| Q |
115 |
aaatcaaaatcaacactaactcatggtatggtctacgggt-------------aataaaaaatattcatttatctcaagttaatcacatcaatcagaatc |
201 |
Q |
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| T |
40274714 |
aaatcaaaatcaacactaacttatggtctggtctacgggtaatcgataagggtaataaaaaatattcatttatctcaagttaatcacatcaatctgaatc |
40274813 |
T |
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| Q |
202 |
tgacaaaggtattcattcatcttaaattaatcacatcaatcctcatcacatattctcatataaaaagttttactcatcacaaaacacatgcatcacacca |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40274814 |
tgacaaaggtattcattcatcttaaattaatcacatcaatcctcatcacatattctcatataaaaagttttactcatcacaaaacacatgcatcacatca |
40274913 |
T |
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| Q |
302 |
tatatacatcgcaaaataagcgcaactcatgtctattcaagaataagaatttcaacaattaagaaaaatagcaa |
375 |
Q |
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| T |
40274914 |
tatatacatcgcaaaataagcgcaactcatgtctatttaagaataagaatttcaacaattaagaaaaatagcaa |
40274987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 375
Target Start/End: Original strand, 161585 - 161869
Alignment:
| Q |
78 |
ccctcgttggcctaggataccccttaagggcaaacacaaatcaaaatcaacactaactcatggtatggtctacgggtaataaaaaatattcatttatctc |
177 |
Q |
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| T |
161585 |
ccctcgttggtctaggatacaacttaagagcaaacacaaatcaaaattaacaccaactcatggttt-----aagggtaatcaaaagtattcattcatctc |
161679 |
T |
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| Q |
178 |
aagttaatcacatcaatcagaatctgacaaaggtattcattcatcttaaattaatcacatcaatcctcatcacatattctcatataaaaagttttactca |
277 |
Q |
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|||||||||||| |||| ||||| ||||| | ||| | | || ||||||||||||||||||||||||||| |||||||| | ||||||||| |
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| T |
161680 |
aagttaatcacaacaatatgaatccgacaagagcatttagttatattaaattaatcacatcaatcctcatca--------catataaagaattttactca |
161771 |
T |
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| Q |
278 |
tcacaaaacacatgcatcacaccatatatacatcgcaaaataagcgcaactcatgtctattcaagaataagaatttcaacaattaagaaaaatagcaa |
375 |
Q |
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| T |
161772 |
tcacagaatacatacatcacatcatatatacatcgccaaatacacgcaactcatgtctattcaagaacaagaattacatcagttaacaaaaatagcaa |
161869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 223 - 375
Target Start/End: Original strand, 19790064 - 19790216
Alignment:
| Q |
223 |
ttaaattaatcacatcaatcctcatcacatattctcatataaaaagtttt-actcatcacaaaacacatgcatcacaccatatatacatcgcaaaataag |
321 |
Q |
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||||||||| |||||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| |||||||||||| | | ||| | |
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| T |
19790064 |
ttaaattaaccacatcaatcttcatcacatattctcatatacaaattttttactcatcacaaaacacatgcatcacatcatatatacatcactagatacg |
19790163 |
T |
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| Q |
322 |
cgcaactcatgtctattcaagaataagaatttcaacaattaagaaaaatagcaa |
375 |
Q |
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| T |
19790164 |
tacaactcatgtctattcaagaacaagaatttc-gcaataaaaaaaaatagcaa |
19790216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 19789981 - 19790058
Alignment:
| Q |
186 |
cacatcaatcagaatctgacaaaggtattcattcatcttaaattaatcacatcaatcctcatcacatattctcatata |
263 |
Q |
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|||| ||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||| ||||||||| |||||||||| |
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| T |
19789981 |
cacaacaatccgaatctgacaagggtattcattcctcttaaattaaccacattaatcttcatcacattttctcatata |
19790058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 19789763 - 19789942
Alignment:
| Q |
29 |
attacattcatgagtcaaacgcccacttaccccttgcatctaatctcccccctcgttggcctaggataccccttaagggcaaacacaaatcaaaatcaac |
128 |
Q |
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| T |
19789763 |
attacactcatgagtgaaacactcgcttaccccttacatataatctcccc--tcgttggcctatgatacacat-aagagcaaacacaacacaaaatcaat |
19789859 |
T |
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| Q |
129 |
actaactcatggtat---ggtc-----tacgggtaataaaaaatattcatttatctcaagttaatcacatcaatcagaatctga |
204 |
Q |
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| T |
19789860 |
actaattcatggtttaagggtaatcgataagggtaatcaaaa-tattcattcatctcaagttaatcacatcaatctgaatctga |
19789942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 26706910 - 26707023
Alignment:
| Q |
28 |
cattacattcatgagtcaaacgcccacttaccccttgcatctaatctcccccctcgttggcctaggataccccttaagggcaaacacaaatcaaaatcaa |
127 |
Q |
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| T |
26706910 |
cattacaatcatgagtcaaatggtcgcttaccccttacatctaatctctcccttcgttggcctacgacaccccttaagagcaaacataaatcaaaatcat |
26707009 |
T |
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| Q |
128 |
cactaactcatggt |
141 |
Q |
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|||||||||||||| |
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| T |
26707010 |
cactaactcatggt |
26707023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 7902936 - 7902885
Alignment:
| Q |
65 |
catctaatctcccccctcgttggcctaggataccccttaagggcaaacacaa |
116 |
Q |
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| T |
7902936 |
catctaatctctcccctcgttggcataggataccccttagaagcaaacacaa |
7902885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 34487909 - 34487972
Alignment:
| Q |
66 |
atctaatctcccccctcgttggcctaggataccccttaagggcaaacacaaatcaaaatcaaca |
129 |
Q |
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| T |
34487909 |
atctaatctctcccctcgttggcctatgatacaccttaagagcaaatacaaatcaaaatcaaca |
34487972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 12926276 - 12926122
Alignment:
| Q |
99 |
ccttaagggcaaacacaaatcaaaatcaacactaactcatggtat---ggtc-----tacgggtaataaaaaatattcatttatctcaagttaatcacat |
190 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||||||| | ||| || ||| ||| |||| |||||||| ||||||||||||||||| |
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| T |
12926276 |
ccttaagagcaaacacaaatcaaaattaacactaactcatggtttaagggtaatcgataagggcaatcaaaagtattcattcatctcaagttaatcacaa |
12926177 |
T |
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| Q |
191 |
caatcagaatctgacaaaggtattcattcatcttaaattaatcacatcaatcctc |
245 |
Q |
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|||| ||||| ||| | ||||| | | |||||||||||||||| ||||||||| |
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| T |
12926176 |
caatatgaatccgacgagagtatttagttatcttaaattaatcacgtcaatcctc |
12926122 |
T |
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