View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17250_low_3 (Length: 361)

Name: NF17250_low_3
Description: NF17250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17250_low_3
NF17250_low_3
[»] chr7 (3 HSPs)
chr7 (1-341)||(34719473-34719810)
chr7 (142-287)||(18925683-18925825)
chr7 (121-338)||(34714830-34715044)
[»] chr4 (14 HSPs)
chr4 (237-341)||(6549218-6549322)
chr4 (245-341)||(6625694-6625790)
chr4 (239-341)||(6536895-6536997)
chr4 (238-318)||(6812918-6812998)
chr4 (239-297)||(6648269-6648327)
chr4 (239-341)||(6770596-6770698)
chr4 (239-341)||(6793521-6793623)
chr4 (238-318)||(6712841-6712921)
chr4 (245-341)||(6833472-6833568)
chr4 (239-294)||(6716629-6716684)
chr4 (239-341)||(6592057-6592159)
chr4 (97-137)||(6549081-6549121)
chr4 (97-137)||(6591918-6591958)
chr4 (239-279)||(7889514-7889554)
[»] scaffold0552 (1 HSPs)
scaffold0552 (238-318)||(390-470)
[»] scaffold0813 (1 HSPs)
scaffold0813 (239-294)||(1992-2047)
[»] chr1 (1 HSPs)
chr1 (1-30)||(27446684-27446713)
[»] scaffold0373 (1 HSPs)
scaffold0373 (239-303)||(12681-12745)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 34719473 - 34719810
Alignment:
Q  1 ataacaaataacatactaacatttgtcattnnnnnnnggtcaggaagccaaagatcatgatctgacattactaaagtataacaaataaataaataaaaat 100  Q
    |||||||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34719473 ataacaaataacatactaacatttatcattaaaaaaaggtcaggaagccaaagatcatgatctgacattactaatgtataacaaataaataaataaaaat 34719572  T
Q  101 cacctggaatttatgaggacaaaccctgctatgccactgatttcaaggagcgctgttttccaattcatcttctcatcttcttcatccactgagattcctg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  34719573 cacctggaatttatgaggacaaaccctgctatgccactgatttcaaggagcgctgttttccaattcatcttctcatctt---catccactgagattcctg 34719669  T
Q  201 agacgagtttttcaaagccatctccgaatttgccggtttgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgct 300  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34719670 agacgagtttttcaaaaccatctccgaatttgccggtttgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagatccctgct 34719769  T
Q  301 tcttccacattccatgatttgctacaactcttgcatacacc 341  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  34719770 tcttccacattccatgatttgctccaactcttgcatacacc 34719810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 18925825 - 18925683
Alignment:
Q  142 ttcaaggagcgctgttttccaattcatcttctcatcttcttcatccactgagattcctgagacgagtttttcaaagccatctccgaatttgccggtttga 241  Q
    |||||||||||||||||||||||||||||||  || ||    |||||| |  |||| ||||| |||||||||||| || ||||| ||  |||||||||||    
T  18925825 ttcaaggagcgctgttttccaattcatcttcgtatattt---atccaccggaattcttgagatgagtttttcaaaaccgtctccaaacatgccggtttga 18925729  T
Q  242 tgtcgtacttctgagggatttacctcatagaacactggtataacca 287  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  18925728 tgtcgtacttctgagggatctacctcatagaacactggtataacca 18925683  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 121 - 338
Target Start/End: Original strand, 34714830 - 34715044
Alignment:
Q  121 aaaccctgctatgccactgatttcaaggagcgctgttttccaattcatcttctcatcttcttcatccactgagattcctgagacgagtttttcaaagcca 220  Q
    ||||||||||||||||| |||||||||||||  |  ||||||||||  |||||||| |  || |  || |||||||| ||||| |||| ||||||| ||     
T  34714830 aaaccctgctatgccaccgatttcaaggagcatttctttccaattc--cttctcatatcgtt-acgcattgagattcttgagatgagtctttcaaaaccg 34714926  T
Q  221 tctccgaatttgccggtttgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttcttccacattccatgattt 320  Q
    ||||| ||    ||||||||||||  |||||||||||||| ||||||||| ||||||||||||||||||| ||||| || ||| | ||||| ||||||||    
T  34714927 tctccaaaccaaccggtttgatgttctacttctgagggatctacctcataaaacactggtataaccaccaaaccccagcgtctgcgacatttcatgattt 34715026  T
Q  321 gctacaactcttgcatac 338  Q
     || ||||||||||||||    
T  34715027 cctccaactcttgcatac 34715044  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 341
Target Start/End: Original strand, 6549218 - 6549322
Alignment:
Q  237 tttgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttcttccacattccatgatttgctacaactcttgcat 336  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||| ||| |||||||||||| |||| |||  ||||||||| | || ||||||  ||||    
T  6549218 tttgatgacgtacttctgagggatccacctcatagaacactggtacaacgaccagacccctgtttctaccaatttccatgatgttctccaactcaagcat 6549317  T
Q  337 acacc 341  Q
    |||||    
T  6549318 acacc 6549322  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 245 - 341
Target Start/End: Original strand, 6625694 - 6625790
Alignment:
Q  245 cgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttcttccacattccatgatttgctacaactcttgcatacacc 341  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||| |||  |||||| || | || ||||||| |||||||||    
T  6625694 cgtacttctgagggatctacctcatagaacactggtacaaccaccagacccccggttctgccaatttccattatcttctccaactctagcatacacc 6625790  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 341
Target Start/End: Original strand, 6536895 - 6536997
Alignment:
Q  239 tgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttcttccacattccatgatttgctacaactcttgcatac 338  Q
    ||||| ||||||||||||||||  ||||||||||||||||| | ||||||||||||||||   || |||  ||||||||| | || ||||||| ||||||    
T  6536895 tgatgacgtacttctgagggatccacctcatagaacactggcacaaccaccagacccctggccctgccaatttccatgatcttctccaactctagcatac 6536994  T
Q  339 acc 341  Q
    |||    
T  6536995 acc 6536997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 6812998 - 6812918
Alignment:
Q  238 ttgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttcttccacattccatgat 318  Q
    |||||| |||||||||||||||| |||||||||||| ||||||| |||||||| ||| | | ||||||||  |||||||||    
T  6812998 ttgatgacgtacttctgagggatctacctcatagaagactggtacaaccaccataccaccggttcttccaatttccatgat 6812918  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 6648327 - 6648269
Alignment:
Q  239 tgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccct 297  Q
    ||||| |||||||||||||||| ||||||||| |||||||| | |||||||||||||||    
T  6648327 tgatgacgtacttctgagggatctacctcataaaacactggcaaaaccaccagacccct 6648269  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 341
Target Start/End: Complemental strand, 6770698 - 6770596
Alignment:
Q  239 tgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttcttccacattccatgatttgctacaactcttgcatac 338  Q
    ||||| ||||||||||| ||||  ||||||||||||||||| | ||| |||| ||||||| |||| |||  ||||||||| | || ||||||| ||||||    
T  6770698 tgatgacgtacttctgaaggatccacctcatagaacactggcacaacaaccaaacccctggttctgccaatttccatgatcttctccaactctagcatac 6770599  T
Q  339 acc 341  Q
    |||    
T  6770598 acc 6770596  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 341
Target Start/End: Complemental strand, 6793623 - 6793521
Alignment:
Q  239 tgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttcttccacattccatgatttgctacaactcttgcatac 338  Q
    ||||| |||||||||||||||  |||||| ||||||||||| | ||| |||||||||||| |||| |||  |||||| || | || ||||||| ||||||    
T  6793623 tgatgacgtacttctgagggagctacctcgtagaacactggcacaacaaccagacccctgtttctgccaatttccattatcttctccaactctagcatac 6793524  T
Q  339 acc 341  Q
    |||    
T  6793523 acc 6793521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 6712921 - 6712841
Alignment:
Q  238 ttgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttcttccacattccatgat 318  Q
    |||||| ||||||||||| |||| ||||||||| |  ||||||| |||||||||||| | | ||||||||  |||||||||    
T  6712921 ttgatgacgtacttctgatggatctacctcataaaggactggtacaaccaccagaccaccggttcttccaatttccatgat 6712841  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 341
Target Start/End: Complemental strand, 6833568 - 6833472
Alignment:
Q  245 cgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttcttccacattccatgatttgctacaactcttgcatacacc 341  Q
    |||||||||||||||  |||||||||||||||||| | ||| |  |||||| || ||||||||  |||||| || | || ||||||| |||||||||    
T  6833568 cgtacttctgagggagctacctcatagaacactggcacaacaataagacccttggttcttccaatttccattatcttctccaactctagcatacacc 6833472  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 6716684 - 6716629
Alignment:
Q  239 tgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacc 294  Q
    |||||||||||||||||||||| ||| |||||||| ||||| | ||||||| ||||    
T  6716684 tgatgtcgtacttctgagggatctacatcatagaagactggcacaaccacccgacc 6716629  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 341
Target Start/End: Original strand, 6592057 - 6592159
Alignment:
Q  239 tgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttcttccacattccatgatttgctacaactcttgcatac 338  Q
    ||||| ||||||||||| |||  ||||||||| || ||||| | ||| |||||||||||| |||| |||  |||||| || | || ||||||| ||||||    
T  6592057 tgatggcgtacttctgatggagctacctcataaaatactggcacaacgaccagacccctgtttctgccaatttccattatcttctccaactctagcatac 6592156  T
Q  339 acc 341  Q
    |||    
T  6592157 acc 6592159  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 6549081 - 6549121
Alignment:
Q  97 aaatcacctggaatttatgaggacaaaccctgctatgccac 137  Q
    |||| |||| |||||||||||||||||||||| ||||||||    
T  6549081 aaataaccttgaatttatgaggacaaaccctgatatgccac 6549121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 6591918 - 6591958
Alignment:
Q  97 aaatcacctggaatttatgaggacaaaccctgctatgccac 137  Q
    |||| ||||||||| ||||||||||||||||||||| ||||    
T  6591918 aaataacctggaatctatgaggacaaaccctgctattccac 6591958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 7889514 - 7889554
Alignment:
Q  239 tgatgtcgtacttctgagggatttacctcatagaacactgg 279  Q
    ||||| |||||||| ||||||| ||||||||||||||||||    
T  7889514 tgatgacgtacttccgagggatctacctcatagaacactgg 7889554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 470 - 390
Alignment:
Q  238 ttgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttcttccacattccatgat 318  Q
    |||||| |||||||||||||||| |||||||||||| ||||||| |||||||| ||| | | ||||||||  |||||||||    
T  470 ttgatgacgtacttctgagggatctacctcatagaagactggtacaaccaccataccaccggttcttccaatttccatgat 390  T

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Target: scaffold0813 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 1992 - 2047
Alignment:
Q  239 tgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacc 294  Q
    |||||||||||||||||||||| ||| |||||||| ||||| | ||||||| ||||    
T  1992 tgatgtcgtacttctgagggatctacatcatagaagactggcacaaccacccgacc 2047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 27446684 - 27446713
Alignment:
Q  1 ataacaaataacatactaacatttgtcatt 30  Q
    ||||||||||||||||||||||||||||||    
T  27446684 ataacaaataacatactaacatttgtcatt 27446713  T

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Target: scaffold0373 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 12681 - 12745
Alignment:
Q  239 tgatgtcgtacttctgagggatttacctcatagaacactggtataaccaccagacccctgcttct 303  Q
    ||||| |||||||||||||||  |||||| || |||||||| | ||| |||||||||||| ||||    
T  12681 tgatgacgtacttctgagggagctacctcgtaaaacactggcacaacaaccagacccctggttct 12745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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