View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17250_low_4 (Length: 294)

Name: NF17250_low_4
Description: NF17250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17250_low_4
NF17250_low_4
[»] chr4 (6 HSPs)
chr4 (1-277)||(40275023-40275299)
chr4 (176-269)||(6821985-6822078)
chr4 (176-265)||(19727019-19727108)
chr4 (58-259)||(17419933-17420136)
chr4 (19-53)||(40274988-40275022)
chr4 (53-101)||(19727186-19727234)
[»] chr8 (1 HSPs)
chr8 (54-160)||(19790297-19790403)
[»] scaffold0009 (1 HSPs)
scaffold0009 (55-215)||(161937-162096)
[»] chr6 (4 HSPs)
chr6 (176-266)||(22394914-22395004)
chr6 (180-269)||(14747145-14747234)
chr6 (210-269)||(7849024-7849083)
chr6 (53-97)||(8886306-8886350)
[»] scaffold0010 (2 HSPs)
scaffold0010 (176-265)||(143677-143766)
scaffold0010 (51-101)||(143550-143600)
[»] scaffold0061 (2 HSPs)
scaffold0061 (53-272)||(16105-16326)
scaffold0061 (53-272)||(25163-25384)
[»] scaffold0408 (1 HSPs)
scaffold0408 (180-269)||(15580-15669)
[»] chr5 (2 HSPs)
chr5 (196-249)||(25931777-25931830)
chr5 (180-270)||(19020774-19020864)
[»] scaffold0170 (1 HSPs)
scaffold0170 (210-270)||(18306-18366)
[»] chr7 (2 HSPs)
chr7 (210-265)||(16067507-16067562)
chr7 (53-101)||(16067672-16067720)
[»] scaffold1043 (1 HSPs)
scaffold1043 (53-101)||(140-188)
[»] chr2 (3 HSPs)
chr2 (189-265)||(7902316-7902392)
chr2 (180-264)||(24315740-24315824)
chr2 (53-101)||(24315904-24315952)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 40275023 - 40275299
Alignment:
Q  1 aacatcaatgagcacaccttagccaattatgatcacaatacctatttgacaattaagtcaagcaacaccttaataaaatttctaattccttttttaacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40275023 aacatcaatgagcacaccttagccaattatgatcacaatacctatttgacaattaagtcaagcaacaccttaataaaatttctaattccttttttaacct 40275122  T
Q  101 cgctttcatatttgctcattaatttatccatctcgcaaaggctacaaccgttgcatcgagtctcaaatgaatttgtgggaaatacgggtttccggttcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40275123 cgctttcatatttgctcattaatttatccatctcgcaaaggctacaaccgtcgcatcgagtctcaaatgaatttgtgggaaatacgggtttccggttcat 40275222  T
Q  201 cacgattattttacactcatgacctcgaactcttttccctcaccccatatctggattgaagctttcacacaagtaag 277  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  40275223 cacaattattttacactcatgacctcgaactcttttccctcaccccatatctggattgaggctttcacactagtaag 40275299  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 6821985 - 6822078
Alignment:
Q  176 tgggaaatacgggtttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccatatctggattgaagctttcaca 269  Q
    |||||||||||  ||||| ||||||| |  ||| |||||| |||||| ||| ||||||| || ||||||||||| ||| |||||||||||||||    
T  6821985 tgggaaatacgactttcccgttcatctcagttaatttacattcatgatctcaaactcttctctctcaccccatacctgaattgaagctttcaca 6822078  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 265
Target Start/End: Complemental strand, 19727108 - 19727019
Alignment:
Q  176 tgggaaatacgggtttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccatatctggattgaagcttt 265  Q
    |||||||||||| ||||  ||||||| |  ||| ||||||||||||| |||||||| || || ||||||||||| ||| |||||||||||    
T  19727108 tgggaaatacggctttctcgttcatctcagttaatttacactcatgatctcgaacttttctctctcaccccatacctgaattgaagcttt 19727019  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 259
Target Start/End: Original strand, 17419933 - 17420136
Alignment:
Q  58 tcaagcaacaccttaataaaatttctaattccttttttaacctcgct--ttcatatttgctcattaatttatccatctcgcaaagg-ctacaaccgttgc 154  Q
    |||||||||||||||||||  |||||||||| | |||||||||| |   |  | |||||| |||||||| ||   |||| |||||| |||||||||||||    
T  17419933 tcaagcaacaccttaataatgtttctaattcttcttttaacctcccacgtctaaatttgcacattaattaattattctctcaaagggctacaaccgttgc 17420032  T
Q  155 atcgagtctcaaatgaatttgtgggaaatacgggtttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccatatctgg 254  Q
        || ||| ||| || || |||||||||||  ||||| ||||||| |  ||| ||||||||||||| ||| ||||||| || ||||||||||| ||||    
T  17420033 ggtaagcctcgaataaactt-tgggaaatacgattttcccgttcatctcagttaatttacactcatgatctcaaactcttctctctcaccccatacctgg 17420131  T
Q  255 attga 259  Q
     ||||    
T  17420132 tttga 17420136  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 40274988 - 40275022
Alignment:
Q  19 ttagccaattatgatcacaatacctatttgacaat 53  Q
    |||||||||||||||||||||||||||| ||||||    
T  40274988 ttagccaattatgatcacaatacctattcgacaat 40275022  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 19727234 - 19727186
Alignment:
Q  53 ttaagtcaagcaacaccttaataaaatttctaattccttttttaacctc 101  Q
    |||| |||||||||||||||||||  |||||||||| | ||||||||||    
T  19727234 ttaaatcaagcaacaccttaataatgtttctaattcttcttttaacctc 19727186  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 19790297 - 19790403
Alignment:
Q  54 taagtcaagcaacaccttaataaaatttctaattccttttttaacctcgctttcatatttgctcattaatttatccatctcgcaaaggctacaaccgttg 153  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||| ||||||||||| |||||| |||||||||||||||| |    
T  19790297 taagtcaagcaacaccttaataaaatttctaattcctcttttaaccttacttccatatttgcacattaatttattcatctctcaaaggctacaaccgtcg 19790396  T
Q  154 catcgag 160  Q
    || ||||    
T  19790397 cagcgag 19790403  T

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Target: scaffold0009 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 161937 - 162096
Alignment:
Q  55 aagtcaagcaacaccttaataaaatttctaattccttttttaacctcgctttcatatttgctcattaatttatccatctcgcaaaggctacaaccgttgc 154  Q
    |||||||||| |||||||||||||||| ||||| || |||||||||| ||| ||||||||| |||||| |||| |||||| |||||||||||||||| ||    
T  161937 aagtcaagcatcaccttaataaaatttataatttctcttttaacctcacttccatatttgcacattaacttattcatctctcaaaggctacaaccgtcgc 162036  T
Q  155 atcgagtctcaaatgaatttgtgggaaatacgggtttccggttcatcacgattattttaca 215  Q
    | |||| ||||||| ||||| |||||||||    ||||| |||||||||  ||||||||||    
T  162037 aacgagcctcaaattaattt-tgggaaatataattttcccgttcatcacagttattttaca 162096  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 22395004 - 22394914
Alignment:
Q  176 tgggaaatacgggtttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccatatctggattgaagctttc 266  Q
    |||||||||  | ||||| ||| ||| | |||| ||||||||||||| |||||||||||||||||||||||||| ||||||  ||||||||    
T  22395004 tgggaaatattgttttcctgtttatctcaattaatttacactcatgatctcgaactcttttccctcaccccatacctggatcaaagctttc 22394914  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 14747145 - 14747234
Alignment:
Q  180 aaatacgggtttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccatatctggattgaagctttcaca 269  Q
    |||||||  ||||| |||| || | |||| ||||||||||||| ||||||||||| || ||||||||||| ||| |||||||| ||||||    
T  14747145 aaatacgactttcccgttcttctcaattaatttacactcatgatctcgaactcttctctctcaccccatacctgaattgaagcattcaca 14747234  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 7849024 - 7849083
Alignment:
Q  210 tttacactcatgacctcgaactcttttccctcaccccatatctggattgaagctttcaca 269  Q
    ||||||||||||| ||||||||||| || ||||||||||| ||| |||||||| ||||||    
T  7849024 tttacactcatgatctcgaactcttctctctcaccccatacctgaattgaagccttcaca 7849083  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 8886306 - 8886350
Alignment:
Q  53 ttaagtcaagcaacaccttaataaaatttctaattccttttttaa 97  Q
    |||| ||||| |||||||||||||| ||||||||| |||||||||    
T  8886306 ttaaatcaagaaacaccttaataaagtttctaatttcttttttaa 8886350  T

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Target: scaffold0010 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 143677 - 143766
Alignment:
Q  176 tgggaaatacgggtttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccatatctggattgaagcttt 265  Q
    |||||||||||| |||||  |||||| |  ||| ||||||||||||| ||||||||||| || ||||||||||| ||| |||||||||||    
T  143677 tgggaaatacggatttccccttcatctcagttaatttacactcatgatctcgaactcttctctctcaccccatacctgaattgaagcttt 143766  T

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Target: scaffold0010; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 143550 - 143600
Alignment:
Q  51 aattaagtcaagcaacaccttaataaaatttctaattccttttttaacctc 101  Q
    |||||| |||||||||||||||||||  |||||||||| | ||||||||||    
T  143550 aattaaatcaagcaacaccttaataatgtttctaattcttattttaacctc 143600  T

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Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 272
Target Start/End: Complemental strand, 16326 - 16105
Alignment:
Q  53 ttaagtcaagcaacaccttaataaaatttctaattccttttttaacctcgctt-tc-atatttgctcattaatttatccatctcgcaaagg-ctacaacc 149  Q
    |||| |||||||||||||||||||  |||||||||| | |||||||||| | | || | |||||| |||||||| ||   |||| |||||| ||||||||    
T  16326 ttaaatcaagcaacaccttaataatgtttctaattcttcttttaacctctcatgtctaaatttgcacattaattaattattctctcaaagggctacaacc 16227  T
Q  150 gttgcatcgagtctcaaatgaatttgtgggaaatacgggtttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccata 249  Q
    || ||    || | | |||||| || ||| |||||||| ||||| ||||| | |  ||| ||||||||||||| ||||||||||| || |||||||||||    
T  16226 gtcgcggtaagccccgaatgaactt-tggaaaatacggctttcccgttcaactcagttaatttacactcatgatctcgaactcttctctctcaccccata 16128  T
Q  250 tctggattgaagctttcacacaa 272  Q
     |||   ||||||||||||||||    
T  16127 cctgatatgaagctttcacacaa 16105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 272
Target Start/End: Complemental strand, 25384 - 25163
Alignment:
Q  53 ttaagtcaagcaacaccttaataaaatttctaattccttttttaacctcgctt-tc-atatttgctcattaatttatccatctcgcaaagg-ctacaacc 149  Q
    |||| |||||||||||||||||||  |||||||||| | |||||||||| | | || | |||||| |||||||| ||   |||| |||||| ||||||||    
T  25384 ttaaatcaagcaacaccttaataatgtttctaattcttcttttaacctctcatgtctaaatttgcacattaattaattattctctcaaagggctacaacc 25285  T
Q  150 gttgcatcgagtctcaaatgaatttgtgggaaatacgggtttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccata 249  Q
    || ||    || | | |||||| || ||| |||||||| ||||| ||||| | |  ||| ||||||||||||| ||||||||||| || |||||||||||    
T  25284 gtcgcggtaagccccgaatgaactt-tggaaaatacggctttcccgttcaactcagttaatttacactcatgatctcgaactcttctctctcaccccata 25186  T
Q  250 tctggattgaagctttcacacaa 272  Q
     |||   ||||||||||||||||    
T  25185 cctgatatgaagctttcacacaa 25163  T

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Target: scaffold0408 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 15580 - 15669
Alignment:
Q  180 aaatacgggtttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccatatctggattgaagctttcaca 269  Q
    |||||||  ||||| |||| || | |||| ||||||||||||| ||||||||||| || ||||||||||| ||| |||||||| ||||||    
T  15580 aaatacgactttcccgttcttctcaattaatttacactcatgatctcgaactcttctctctcaccccatacctgaattgaagcattcaca 15669  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 25931830 - 25931777
Alignment:
Q  196 ttcatcacgattattttacactcatgacctcgaactcttttccctcaccccata 249  Q
    |||||| | |||||||||||||||||  ||||||||||| ||||||||||||||    
T  25931830 ttcatcccaattattttacactcatgtactcgaactcttctccctcaccccata 25931777  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 19020774 - 19020864
Alignment:
Q  180 aaatacgggtttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccatatctggattgaagctttcacac 270  Q
    |||||||| ||||| ||||||| |  ||| |||| |||||||| ||| ||||||| || |||||||||||  |||| || |||||||||||    
T  19020774 aaatacggctttcccgttcatctcagttaatttatactcatgatctcaaactcttctctctcaccccatacttggaatggagctttcacac 19020864  T

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Target: scaffold0170 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 18306 - 18366
Alignment:
Q  210 tttacactcatgacctcgaactcttttccctcaccccatatctggattgaagctttcacac 270  Q
    ||||||||||||| ||||||||||| |  ||||||||||| || ||||||| |||||||||    
T  18306 tttacactcatgatctcgaactcttctttctcaccccatacctagattgaaactttcacac 18366  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 16067562 - 16067507
Alignment:
Q  210 tttacactcatgacctcgaactcttttccctcaccccatatctggattgaagcttt 265  Q
    ||||||||||||| ||||||||||| || |||| |||||| ||| |||||||||||    
T  16067562 tttacactcatgatctcgaactcttctctctcaacccatacctgaattgaagcttt 16067507  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 16067720 - 16067672
Alignment:
Q  53 ttaagtcaagcaacaccttaataaaatttctaattccttttttaacctc 101  Q
    |||| |||||||||||||||||||  |||||||||| | ||||||||||    
T  16067720 ttaaatcaagcaacaccttaataatgtttctaattcttcttttaacctc 16067672  T

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Target: scaffold1043 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 188 - 140
Alignment:
Q  53 ttaagtcaagcaacaccttaataaaatttctaattccttttttaacctc 101  Q
    |||| |||||||||||||||||||  |||||||||| | ||||||||||    
T  188 ttaaatcaagcaacaccttaataatgtttctaattcttcttttaacctc 140  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 7902392 - 7902316
Alignment:
Q  189 tttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccatatctggattgaagcttt 265  Q
    ||||| |||| |||| || ||||||||||||||  ||||||||||| || ||||||||||  |  ||||||||||||    
T  7902392 tttcccgttcgtcacaatcattttacactcatgtactcgaactcttctctctcaccccatgcccagattgaagcttt 7902316  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 24315824 - 24315740
Alignment:
Q  180 aaatacgggtttccggttcatcacgattattttacactcatgacctcgaactcttttccctcaccccatatctggattgaagctt 264  Q
    |||||||  ||||| ||||||| |  ||| ||||||||||||| ||||||||||| || ||||| ||||| ||  ||||||||||    
T  24315824 aaatacgactttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcactccataccttaattgaagctt 24315740  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 24315952 - 24315904
Alignment:
Q  53 ttaagtcaagcaacaccttaataaaatttctaattccttttttaacctc 101  Q
    |||| |||||||||||||||||||  |||||||||| | ||||||||||    
T  24315952 ttaaatcaagcaacaccttaataatgtttctaattcttcttttaacctc 24315904  T

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