View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17251_high_1 (Length: 661)
Name: NF17251_high_1
Description: NF17251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17251_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 37841220 - 37841588
Alignment:
| Q |
1 |
tgtttaccgtcttgttgctaaggagaacattgaagaattggaggagttaatggtaattggagatgaaatgttggaagaattgagacatgctgaaaatgtg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37841220 |
tgtttatcgtcttgttgctaaggagaacattgaagaattggaggagttaatggtaattggagatgaaatgttggaagaattgagacatgctgaaaatgtg |
37841319 |
T |
|
| Q |
101 |
aagtatgaagaagttttcactgagaatggatcagaaacggcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37841320 |
aagtatgaagaagttttcactgagaatggatcagaaacggcatcttttctacgtgagataatgaatgaacatgatttttttatagttgggagaagacatg |
37841419 |
T |
|
| Q |
201 |
aaactcaatctcctcaaacagatggattggcagaatggagtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37841420 |
aaactcaatctcctcaaacagatggattggcagaatggagtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagtag |
37841519 |
T |
|
| Q |
301 |
tgcatctgttttggtcgttcaacaacaactctcatgtccgaatgacctcaaagggtgggttttgtagtt |
369 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37841520 |
tgcatctgttttggttgttcaacaacaactctcatgttcgaatgacctcaaagggtgggttttgtagtt |
37841588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 485 - 646
Target Start/End: Original strand, 37841719 - 37841880
Alignment:
| Q |
485 |
atagtaatgtgtatgagaataaatgatgattgaaagaaaagaaattagttgcatggaacaaagaaatgtaaatagaagagaacaaatacaaattcattct |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37841719 |
atagtaatgtgtatgagaataaatgatgattgaaatgaaagaaattagttgcatggaacaaagaaatgtatatagaagagaacaaatacaaattcattct |
37841818 |
T |
|
| Q |
585 |
ctcnnnnnnngttacaaaatacaaattcattctacttattgagaaaaacgtacaacacaatt |
646 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37841819 |
ctctttttttgttacaaaatacaaattcattctacttattgagaaaaacgtgcaacacaatt |
37841880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 37845294 - 37845365
Alignment:
| Q |
299 |
agtgcatctgttttggtcgttcaacaacaactctcatgtccgaatgacctcaaagggtgggttttgtagttg |
370 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
37845294 |
agtgcatttgttttggttgtgcaacaacaactctcacacacgaatgaccttaaagggtggattttgtagttg |
37845365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 38381039 - 38380666
Alignment:
| Q |
1 |
tgtttaccgtcttgttgctaaggagaacattgaagaattggaggagttaatggtaattggagatgaaatgttggaagaattgagacatgctgaaaatgtg |
100 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
38381039 |
tgtttaccgtcttattgctaaggaaaacatagaagaattggaggagttcatggtaattggtgatgaaatgttggaagaatttaaacatgctgaaaatgtg |
38380940 |
T |
|
| Q |
101 |
aagtatgaagaagttttcactgagaatggatcagaaacggcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatg |
200 |
Q |
| |
|
| |||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
38380939 |
aggtatcaagaagttttcactaagaatggatcacaaacagcatcttttctacgtgagattgtgaacgaacatgatttctttatagttgggagaagacatg |
38380840 |
T |
|
| Q |
201 |
aaactcaatctcctcaaacagatggattggcagaatggagtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcag |
300 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
38380839 |
aaactcaatctcctcaaactgatggattagcagaatggagtgaatttccagaacttggtgctattggtgattttcttgcttcacctgatcttaatagtag |
38380740 |
T |
|
| Q |
301 |
tgcatctgttttggtcgttcaacaacaactctcatgtccgaatgacctcaaagggtgggttttgtagttgtcaa |
374 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| | |||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
38380739 |
tgcatctgttttggttgtgcaacaacaactctcacgcacgaatgaccttaaagggtggattttgtagttgtcaa |
38380666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 38389905 - 38389532
Alignment:
| Q |
1 |
tgtttaccgtcttgttgctaaggagaacattgaagaattggaggagttaatggtaattggagatgaaatgttggaagaattgagacatgctgaaaatgtg |
100 |
Q |
| |
|
||||||| |||||||| ||| | | ||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38389905 |
tgtttactgtcttgtttctaggaaaaacatagcagaagtggaggagttaatggtaattggtgatgaaatgttggaagaattgaaacatgctgaaaatgtg |
38389806 |
T |
|
| Q |
101 |
aagtatgaagaagttttcactgagaatggatcagaaacggcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatg |
200 |
Q |
| |
|
| |||| |||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
38389805 |
aggtatcaagaagtttttactgagaatggatcacaaacagcatcttttctacgtgagattgtgaacgaacatgatttctttatagttgggagaagacatg |
38389706 |
T |
|
| Q |
201 |
aaactcaatctcctcaaacagatggattggcagaatggagtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcag |
300 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
38389705 |
aaactcaatatcctcaaaccgatggattagcagaatggagtgaatttccagaacttggtgctattggtgattttcttgcttcacctgatcttaatagtaa |
38389606 |
T |
|
| Q |
301 |
tgcatctgttttggtcgttcaacaacaactctcatgtccgaatgacctcaaagggtgggttttgtagttgtcaa |
374 |
Q |
| |
|
||||||||||||||| || || |||||||||||| | | |||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
38389605 |
tgcatctgttttggttgtgcagcaacaactctcacgcgcaaatgaccttaaaaggtggattttgtagttgtcaa |
38389532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 38398668 - 38398339
Alignment:
| Q |
1 |
tgtttaccgtcttgttgctaaggagaacattgaagaattggaggagttaatggtaattggagatgaaatgttggaagaattgagacatgctgaaaatgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||||||||||| |||| ||||||||| |||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
38398668 |
tgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaagaattgaaaaatgctgaaaatgtg |
38398569 |
T |
|
| Q |
101 |
aagtatgaagaagttttcactgagaatggatcagaaacggcatcttttctacgtgagataatgaatgaacatgannnnnnnatagttgggagaagacatg |
200 |
Q |
| |
|
| |||| |||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
38398568 |
aggtatcaagaagtttttactgagaatggatcacaaacagcatcttttctacgtgagattgtgaacgaacatgatttctttatagttgggagaagacatg |
38398469 |
T |
|
| Q |
201 |
aaactcaatctcctcaaacagatggattggcagaatggagtgaatttccagaacttggagctattggtgattttcttgcttcacccgatcttaatagcag |
300 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||| || |
|
|
| T |
38398468 |
aaactcaatctcctcaaactgatggattagcagaatggagtgaatttccagaactcggtgctattggtgattttcttgtttcacctgatcttaatagtag |
38398369 |
T |
|
| Q |
301 |
tgcatctgttttggtcgttcaacaacaact |
330 |
Q |
| |
|
||||||||||||||| || ||||||||||| |
|
|
| T |
38398368 |
tgcatctgttttggttgtgcaacaacaact |
38398339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University