View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17251_high_3 (Length: 529)
Name: NF17251_high_3
Description: NF17251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17251_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 321 - 520
Target Start/End: Original strand, 22478136 - 22478335
Alignment:
| Q |
321 |
ttgaaccattgcttctgcctcttccttgaaatggtactttttgtttcctttttattctgcctctttctctgctaaacaatataaagtactttttgttatt |
420 |
Q |
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| T |
22478136 |
ttgaaccattgcttctgcctcttccttgaaatggtactttttgtttcctttttattctgcctctttatctgctaaacaatataaagtactttttgttatt |
22478235 |
T |
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| Q |
421 |
ctctttgaaatggtaaataaatccacgagtattcggactttgaaattctttttataactgaaatgatattttacatttgtgtatatctgagttttatttt |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
22478236 |
ctctttgaaatggtaaataaatccacgagtattcggactttgaaattttttttataaccgaaatgatattttacatttgtgaatatctgagttttatttt |
22478335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 321 - 520
Target Start/End: Original strand, 22455113 - 22455313
Alignment:
| Q |
321 |
ttgaaccattgcttctgcctcttccttgaaatggtactttttgtttcctttttattctgcctctttctctgctaaacaatataaagtactttttgttatt |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22455113 |
ttgaaccattgcttctgcctcttccttgaaatggtactttttgtttcctttttattctgcctccttctctgctaaacaatataaagtactttttgttatt |
22455212 |
T |
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| Q |
421 |
ctctttgaaatggtaaataaatccacgagtattcggactttgaa-attctttttataactgaaatgatattttacatttgtgtatatctgagttttattt |
519 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22455213 |
ctctttgaaatggtaaataaatccacgggtatttggactttgaattttttttttataactgaaatgatattttacatttgtgtatatctgagttttattt |
22455312 |
T |
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| Q |
520 |
t |
520 |
Q |
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| T |
22455313 |
t |
22455313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 188 - 323
Target Start/End: Original strand, 22454880 - 22455015
Alignment:
| Q |
188 |
ctattatgcagaaggatttgtaaatttgtgttcaatgatatatatggaggaatgagcattgagttatctgagatcaatagagagattgaggccattagag |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22454880 |
ctattatgcagaaggatttgtaaatttgtgttcaatgatatatatggaggaatgagcatagagttatctgagatcaatagagagattgaggccattagag |
22454979 |
T |
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| Q |
288 |
accatgaaagtggtaattctttcatatctttatttg |
323 |
Q |
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|| || |||||||| ||||||||||||||||||||| |
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| T |
22454980 |
actataaaagtggtgattctttcatatctttatttg |
22455015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 188 - 323
Target Start/End: Original strand, 22473436 - 22473571
Alignment:
| Q |
188 |
ctattatgcagaaggatttgtaaatttgtgttcaatgatatatatggaggaatgagcattgagttatctgagatcaatagagagattgaggccattagag |
287 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22473436 |
ctattatgcagaaggatttgtaaatttgttttcaatgatatatatggaggaatgagcatagagttatctgagatcaatagagagattgaggccattagag |
22473535 |
T |
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| Q |
288 |
accatgaaagtggtaattctttcatatctttatttg |
323 |
Q |
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|| || |||||||| ||||||||||||||||||||| |
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| T |
22473536 |
actataaaagtggtgattctttcatatctttatttg |
22473571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 22454710 - 22454791
Alignment:
| Q |
18 |
agttgttaatggtaagaaactggatgttggcgtagcgcat-attgaagggttgaaaaattcttccgttgatttatctcatcc |
98 |
Q |
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| T |
22454710 |
agttgttaatggtaagaaactggatgttggcgtagcgcattattgaagggttgaaaaattcttccgttgatttatctcatcc |
22454791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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