View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17251_high_4 (Length: 474)
Name: NF17251_high_4
Description: NF17251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17251_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 54268376 - 54267930
Alignment:
| Q |
19 |
acataacccatgcaaagccacactatggagtaataaccgaattggtcaatgaatagaagcaatgaattgaatgacacttttctaaggtcttcgtttacaa |
118 |
Q |
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| T |
54268376 |
acataacccatgcaaagccacactatggagtaataactgaattggtcaaggaatagaagcaatgaattgaatgacacttttctaaggtcttcgtttacaa |
54268277 |
T |
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| Q |
119 |
taattataaaatcattttcatttgaacgttgaaacgaaaaa-ggcttattatgtatacacctacataaatttagattgttgtacctggctagctacttaa |
217 |
Q |
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| T |
54268276 |
taattataaaatcattttcatttgaacgttgaaacgaaaaaaggcttattatgtatacacctacataaatttagattgttgtacctggctagctacttaa |
54268177 |
T |
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| Q |
218 |
ctactagtcataattatagtagtaaagaacattttacgcaccatacgagcatttatacgtacattatctagtgttcatatgtacgtacgtattttatttt |
317 |
Q |
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| T |
54268176 |
ctactagtcataattatagtagtaaagaacattttacgcaccatacgagcatttatacgtacatca-ctagtgttcatatgtacgtacgtattttatttt |
54268078 |
T |
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| Q |
318 |
gtgaaagaaaaggtgtgtacagtatttcattgtttgccaagataattagagacaaagattttgaacttaccatatgttccgagataaagatacttattgc |
417 |
Q |
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| T |
54268077 |
gtgaaagaaaaggtgtgtacagtatttcattgtttgctaagataattagagacaaagattttgaacttaccatatgttccgagataaagatacttattgc |
54267978 |
T |
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| Q |
418 |
caaaaactttgccaatccgtgcctcccaccttccgttatgatgatgtc |
465 |
Q |
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| T |
54267977 |
caaaaactttgccaatccgtgcctcccaccttccgttatgatgatgtc |
54267930 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 465
Target Start/End: Complemental strand, 25051958 - 25051874
Alignment:
| Q |
381 |
aacttaccatatgttccgagataaagatacttattgccaaaaactttgccaatccgtgcctcccaccttccgttatgatgatgtc |
465 |
Q |
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|||| |||||||||||| ||||||||||| || ||||||||||| | || || || ||||||||||||||||||||||| |||| |
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| T |
25051958 |
aactaaccatatgttccaagataaagatatttgttgccaaaaaccctaccgatacgagcctcccaccttccgttatgatggtgtc |
25051874 |
T |
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