View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17251_high_6 (Length: 410)
Name: NF17251_high_6
Description: NF17251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17251_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 32709955 - 32710128
Alignment:
| Q |
18 |
aagtactgtgcaaaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaaaaggataaagtgggttcgtaagaaat |
117 |
Q |
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| T |
32709955 |
aagtactgtgcaaaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaaaaggataaagtgggttcgtaagaaat |
32710054 |
T |
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| Q |
118 |
ttaccatttataattactgtactgatagaacacgtttccctcagataccccctgaatgtagaagagaccgtgac |
191 |
Q |
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| T |
32710055 |
ttaccatttataattactgtactgatagaacacgtttccctcagataccccctgaatgtagaagagaccgtgac |
32710128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 269 - 398
Target Start/End: Original strand, 32710206 - 32710335
Alignment:
| Q |
269 |
ccaccgtatattactcgaactatgtaataaggaattgaggttgaacccagtggagcctctatgtaatcttcaatctatattgattggtcaatttcaatga |
368 |
Q |
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| T |
32710206 |
ccaccgtatattactcgaactatgtaataaggaattgaggttgaacccagtggagcctctatgtaatcttcaatctatattgattggtcaatttcaatga |
32710305 |
T |
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| Q |
369 |
taataacaacagtttgttacatccaattct |
398 |
Q |
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| T |
32710306 |
taataacaacagtttgttacatccaattct |
32710335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 32718561 - 32718728
Alignment:
| Q |
24 |
tgtgcaaaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaaaaggataaagtgggttcgtaagaaatttacca |
123 |
Q |
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| T |
32718561 |
tgtgcaacacaaggtaaaagatggtgggatcaacctgaatttcgtgatcttgatgctgctcaatggcgtagactaagatgggtgcgccaaaaatacacca |
32718660 |
T |
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| Q |
124 |
tttataattactgtactgatagaacacgtttccctcagataccccctgaatgtagaagagaccgtgac |
191 |
Q |
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| T |
32718661 |
tttataactattgcaccgataggaaacgtttgcctcaaattccacctgaatgcaaaagagaccgtgac |
32718728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 32715183 - 32715248
Alignment:
| Q |
24 |
tgtgcaaaacaaggtagaaaatggtggaatcgacctgaatttcgtgaccttgatgctgctcaatgg |
89 |
Q |
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| T |
32715183 |
tgtgcaacacaaggtaaaagatggtgggatcaacctgaatttcgtgatcttgatgctgctcaatgg |
32715248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 10379680 - 10379629
Alignment:
| Q |
44 |
atggtggaatcgacctgaatttcgtgaccttgatgctgctcaatggaaaagg |
95 |
Q |
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| T |
10379680 |
atggtgggatcaacctgaatttcatgaccttgatgttgctcaatggcaaagg |
10379629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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