View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17251_low_15 (Length: 235)
Name: NF17251_low_15
Description: NF17251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17251_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 38248232 - 38248024
Alignment:
| Q |
11 |
agcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctggaagggtctaatcaatcatgattctgcccctta |
110 |
Q |
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| T |
38248232 |
agcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctggaagggtataatcaatcatgattctgcccctta |
38248133 |
T |
|
| Q |
111 |
agagggattctatatttacacctaatatagcattgatacttgagattaaagatgtgtcgtagtgtcggacaccgagacaatattgacattttttatcata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38248132 |
agagggattctatatttacacctaatatagcattgatacttgagattaaagatgtgtcgtagtgtcggacaccgagacaatattgacattttttatcata |
38248033 |
T |
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| Q |
211 |
tataatcac |
219 |
Q |
| |
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||||||||| |
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| T |
38248032 |
tataatcac |
38248024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 38253199 - 38253055
Alignment:
| Q |
76 |
tggaagggtctaatcaatcatgattctgccccttaagagggattctatatttacacctaatatagcattgatacttgagattaaagatgtgtcgta-gtg |
174 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||| || |||||||||||||||||||| | ||| |
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| T |
38253199 |
tggaagggtctaatcaataatgattctgcctcttaagagggattccatatttacactcaatatagcaccgacacttgagattaaagatgtgtaacacgtg |
38253100 |
T |
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| Q |
175 |
tcggacaccgagacaatattgacattttttatcatatataatcac |
219 |
Q |
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| T |
38253099 |
tcggacaccgagacaatattggcattttttatcatatataatcac |
38253055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 38253385 - 38253323
Alignment:
| Q |
11 |
agcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaa |
73 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38253385 |
agcatagatcaaaaggagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaa |
38253323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 38243018 - 38242976
Alignment:
| Q |
25 |
ggagggaaatgggtgtgttcatgtgaaaaggacaagtctccca |
67 |
Q |
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| T |
38243018 |
ggaggaaaatgggtgtgttcatgtgaagaggacaagtctccca |
38242976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 38214120 - 38214072
Alignment:
| Q |
30 |
gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
78 |
Q |
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|
||||||| ||||||||||||| ||||||||||||||||||||| |||| |
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| T |
38214120 |
gaaatggttgtgttcatgtgatgaggacaagtctcccactacaaactgg |
38214072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 38226499 - 38226451
Alignment:
| Q |
30 |
gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
78 |
Q |
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|
||||||| |||||| ||||||| ||||||||||||||||||||| |||| |
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|
| T |
38226499 |
gaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactgg |
38226451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 38238057 - 38238001
Alignment:
| Q |
11 |
agcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctccca |
67 |
Q |
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|||||||| || ||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
38238057 |
agcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctccca |
38238001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 17454614 - 17454547
Alignment:
| Q |
11 |
agcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
78 |
Q |
| |
|
|||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| |
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| T |
17454614 |
agcacagaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactgg |
17454547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 17433522 - 17433468
Alignment:
| Q |
24 |
aggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
78 |
Q |
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|||||| |||||| |||||||||||||| ||||||||||||||||||||| |||| |
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| T |
17433522 |
aggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactgg |
17433468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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