View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17251_low_2 (Length: 649)
Name: NF17251_low_2
Description: NF17251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17251_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 610; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 11 - 644
Target Start/End: Complemental strand, 37961621 - 37960988
Alignment:
| Q |
11 |
cacagacacaaacataactcacgagaccaagttcaccatgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccatt |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961621 |
cacaaacacaaacataactcacgagaccaagttcaccatgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccatt |
37961522 |
T |
|
| Q |
111 |
ctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961521 |
ctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaa |
37961422 |
T |
|
| Q |
211 |
caacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37961421 |
caacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccaaaacaccga |
37961322 |
T |
|
| Q |
311 |
tccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961321 |
tccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaa |
37961222 |
T |
|
| Q |
411 |
aactggcaccatcttgttccaaatttacctccacctcgtaccgaacaagacaacactcgcgtcatccctataatggctattcaagtcaccgttcttccaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37961221 |
aactggcaccatcttgttccaaatttacctccacctcgtaccgaacaagacaacactcgcatcatccctataatggctattcaagtcaccgttcttccaa |
37961122 |
T |
|
| Q |
511 |
actccggcttgtctatttgcctaagttacaaccatgttgctgcagacggaaaatcacttcaccatgtcatgaaattttgggcctctctttcaaaagccat |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
37961121 |
actccggcttgtctatttgcctaagttacaaccatgttgctgcagacggaaaatcacttcaccatttcgtgaaattttgggcctctctttcaaaagccat |
37961022 |
T |
|
| Q |
611 |
agcaaaaaacaacaataatttgtctctcgaatac |
644 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
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|
| T |
37961021 |
agcaaaaaacaacaataatttgtctcttgaatac |
37960988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 48 - 635
Target Start/End: Original strand, 37906481 - 37907073
Alignment:
| Q |
48 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaactttcttcgacataccatggttttatt |
147 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| | || || | || ||||||||||| |||||||||| | |
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|
| T |
37906481 |
atgaaggtaatagaacatagccaagttgcaccaccaccaaattcacttccatcaccaacaacactccctctcaccttcttcgacatttcatggttttact |
37906580 |
T |
|
| Q |
148 |
gtcacccaa---ttcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccat |
244 |
Q |
| |
|
|||| || | || ||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| | |
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|
| T |
37906581 |
gtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttcctt |
37906680 |
T |
|
| Q |
245 |
aaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctatc |
344 |
Q |
| |
|
|||||| | ||||||||| || || |||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| |
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| T |
37906681 |
aacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatt |
37906780 |
T |
|
| Q |
345 |
tccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccac |
444 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
37906781 |
tccttcactgtagctgaatcctcagcagacttcaacatcctcgtatctgattcacaagatgctcaaaactggcaccatctcgttccaaatttacctccac |
37906880 |
T |
|
| Q |
445 |
ctcgtaccgaacaagacaacactcgcgtcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcctaagttacaacca |
544 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||||||||| |||||| |||||| ||||||||||||||||| || ||||||||||| ||||||||||| |
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|
| T |
37906881 |
ctcgtaccgaacaagacaacattcgtgttatccctataatgtctattccagtcactgttcttccaaactccgggttctctatttgcctcagttacaacca |
37906980 |
T |
|
| Q |
545 |
tgttgctgcagacggaaaatc--acttcaccatgtcatgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtct |
635 |
Q |
| |
|
|||||||||| |||||||||| |||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
37906981 |
tgttgctgcatacggaaaatcgtacttcatcatttcatgaaattttgggcttctctttcaaaagccatagcaaaaaataacaataatttgtct |
37907073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 48 - 623
Target Start/End: Original strand, 37914644 - 37915222
Alignment:
| Q |
48 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaaccattctacccttaactttcttcgacataccatggttttatt |
147 |
Q |
| |
|
|||||||||||||| || | |||| || |||||||||||| ||||||| |||||||||| | | || | |||||||| ||||| | |||||||| | |
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|
| T |
37914644 |
atgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacgagaatccctctcactttctttgacatttcttggttttact |
37914743 |
T |
|
| Q |
148 |
gtca---cccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccat |
244 |
Q |
| |
|
| | ||| || |||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| | |
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|
| T |
37914744 |
gcaaacccccccttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttcctt |
37914843 |
T |
|
| Q |
245 |
aaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctatc |
344 |
Q |
| |
|
|||||| | ||||||||| || || |||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| |
|
|
| T |
37914844 |
aacccttcaacacttctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatc |
37914943 |
T |
|
| Q |
345 |
tccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccac |
444 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
37914944 |
tccttcaccatagctgaatcctcagcagacttcaacatcctcatatctgattcacaagatgctcaaaattggcaccctcttgttccaaatttacctccac |
37915043 |
T |
|
| Q |
445 |
ctcgtaccgaacaagacaacactcgcgtcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcctaagttacaacca |
544 |
Q |
| |
|
||||||| |||||| | || | | | ||| | ||||| |||||| ||||| |||| || ||||| ||||| ||||| || || | || || |
|
|
| T |
37915044 |
ctcgtactgaacaaaatggtacatgtattgttcctctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaaca |
37915143 |
T |
|
| Q |
545 |
tgttgctgcagacggaaaatcacttcaccatgtcatgaaattttgggcctctctttcaaaagccatagcaaaaaacaac |
623 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||||||||||||| | | |||| ||||| ||| |||| |||||| |
|
|
| T |
37915144 |
cgttgttgcagacggaaaatcacttcatcatttcatgaaattttgggcatttgtttccaaagctataacaaacaacaac |
37915222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 3782807 - 3782967
Alignment:
| Q |
102 |
ccaaccattctacccttaactttcttcgacataccatggttttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatt |
201 |
Q |
| |
|
||||||||||| ||| | || ||||| ||||| |||||||||| |||| | ||| |||| |||||||||||||| |||||||||||||||||||| | |
|
|
| T |
3782807 |
ccaaccattcttcccctcacattcttggacattccatggttttgctgtcgaaccattaaacgcatcttcttctaccactttcctcatccaactcatcact |
3782906 |
T |
|
| Q |
202 |
tccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttctt |
262 |
Q |
| |
|
| || ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
3782907 |
ttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaacacttctt |
3782967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 3783017 - 3783084
Alignment:
| Q |
312 |
ccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaa |
379 |
Q |
| |
|
||||| ||||| |||||| ||| ||||||| ||||||||||| | |||||||||| |||| ||||||| |
|
|
| T |
3783017 |
ccttatatacgctacctcaatggagactctctctccttcaccattgctgaatccttagcaaacttcaa |
3783084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 4957855 - 4957761
Alignment:
| Q |
183 |
cctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaa |
277 |
Q |
| |
|
|||||| |||| || || ||||||||||| |||| || ||||||||| |||| |||||| | || |||| ||| ||||||||||| |||||||| |
|
|
| T |
4957855 |
cctcattcaacacaacacttccttcaaacttcactaccaattctcaaaaactctctttccctcactctccaacatttcttccctttctcctctaa |
4957761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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