View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17251_low_6 (Length: 456)
Name: NF17251_low_6
Description: NF17251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17251_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 456
Target Start/End: Original strand, 45024197 - 45024640
Alignment:
| Q |
7 |
gagtgagaagaagatatcatgcatttgtacaacacatacatacaattgacnnnnnnntttgcggaggttcggttgtgacgaatgcagtattcattgtggt |
106 |
Q |
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| T |
45024197 |
gagtgacaagaagatatcatgcatttgtacaacacatacatacaattgacaaaaaaatttgcggaggttcggttgtgacgaatgcattattcattgtggt |
45024296 |
T |
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| Q |
107 |
cactgctttctttgtacnnnnnnnnnnnnnnnnnnnnnnatgacttataccgttaaatatcgggtttccggtgacatttaacaaaatctgtataaggtag |
206 |
Q |
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| T |
45024297 |
cactgctttctttgtactcttcttcttctttct------atgacttataccgttaaatatcgggtttccggtgacatttaacaaaatctgtataaggtag |
45024390 |
T |
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| Q |
207 |
gaacttgagtgattacagaaaatatcaaagatgagaagtgagagacaagagttagtgatagcagaattgaagagacaactatggttagcagttcctctgt |
306 |
Q |
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| T |
45024391 |
gaacttgagtgattacagaaaatatcaatgatgagaagtgagagacaagagttagtgatagcagaattgaagagacaactatggttagcagttcctctgt |
45024490 |
T |
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| Q |
307 |
cctctgttggaatcttacaatacattctacaaacaatttctattatgtttgttggacatcttggtactctcccactttctggtgcttccatggccacttc |
406 |
Q |
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| T |
45024491 |
cctctgttggaatcttacaatacattctacaaacaatttctattatgtttgttggacatcttggtactctcccactttctggtgcttccatggccacttc |
45024590 |
T |
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| Q |
407 |
ctttgcatctgttactggcttcgcattactggtatatacaattatttcat |
456 |
Q |
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| T |
45024591 |
ctttgcatctgttactggcttcacattactggtatatacaattatttcat |
45024640 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 424
Target Start/End: Complemental strand, 30489010 - 30488970
Alignment:
| Q |
384 |
tctggtgcttccatggccacttcctttgcatctgttactgg |
424 |
Q |
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| T |
30489010 |
tctggtgcttccatggctacttcttttgcttctgttactgg |
30488970 |
T |
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