View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17252_high_1 (Length: 438)
Name: NF17252_high_1
Description: NF17252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17252_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 33811614 - 33811292
Alignment:
| Q |
14 |
ttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattatgttgtggtgtggtttcattgctgaaactcttctctat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
33811614 |
ttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaactcttctctat |
33811516 |
T |
|
| Q |
114 |
ttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811515 |
ttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtc |
33811416 |
T |
|
| Q |
214 |
aattcgttgctgacatggtagaatttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgt |
313 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33811415 |
aatttgttactgacatggtagaatttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgt |
33811316 |
T |
|
| Q |
314 |
tactattgtggctggaaaccaaca |
337 |
Q |
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|||||||||||||||||||||||| |
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| T |
33811315 |
tactattgtggctggaaaccaaca |
33811292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 33816532 - 33816210
Alignment:
| Q |
14 |
ttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattatgttgtggtgtggtttcattgctgaaactcttctctat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
33816532 |
ttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaactcttctctat |
33816434 |
T |
|
| Q |
114 |
ttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtc |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33816433 |
ttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtc |
33816334 |
T |
|
| Q |
214 |
aattcgttgctgacatggtagaatttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgt |
313 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33816333 |
aatttgttactgacatggtagaatttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgt |
33816234 |
T |
|
| Q |
314 |
tactattgtggctggaaaccaaca |
337 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
33816233 |
tactattgtggctggaaaccaaca |
33816210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 33807960 - 33807638
Alignment:
| Q |
14 |
ttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattatgttgtggtgtggtttcattgctgaaactcttctctat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
33807960 |
ttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaactcttctctat |
33807862 |
T |
|
| Q |
114 |
ttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtc |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33807861 |
ttatagagggttttgaaccgtgtgcattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttacccattgccaagtttgtc |
33807762 |
T |
|
| Q |
214 |
aattcgttgctgacatggtagaatttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgt |
313 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33807761 |
aatttgttactgacatggtagaatttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgt |
33807662 |
T |
|
| Q |
314 |
tactattgtggctggaaaccaaca |
337 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
33807661 |
tactattgtggctggaaaccaaca |
33807638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 50603145 - 50603003
Alignment:
| Q |
17 |
tctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggat-----tatgttgtggtgtggtttcattgctgaaactcttctct |
111 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| || | |||||||| ||||||||| |
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| T |
50603145 |
tctctcactcttatgaggaactttctatttttctctcaactctgtgtgagtgaggattgtgctatgttgtggtgtgtttgctttgctgaagctcttctct |
50603046 |
T |
|
| Q |
112 |
atttatagagggttttgaaccgtgtgcattaaatgcttggttc |
154 |
Q |
| |
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|||||||||| | |||||||| |||||||||||||||||| |
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| T |
50603045 |
atttatagagagaaatgaaccgtaagcattaaatgcttggttc |
50603003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 2489460 - 2489400
Alignment:
| Q |
362 |
cataacacaaagacaagattctaatttatagcctataagagcatgaggttatagctagcat |
422 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489460 |
cataacacaaagacaagattctaatttatagcctataagagcatgaggttatagctagcat |
2489400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 31152182 - 31152298
Alignment:
| Q |
14 |
ttctctcacactcttatgaggaactctctatttttctctcaactctatgtgagtgaggattatgttgtggtgtggtttcattgctgaaactcttctctat |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| || || | || |||||||||||| || | |||||||| ||||||||||| |
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| T |
31152182 |
ttctctcacactcttacgaggaactctctatttttctctcaactcccgaggattgtg--ttgtgttgtggtgtgattgctttgctgaagctcttctctat |
31152279 |
T |
|
| Q |
114 |
ttatagagggttttgaacc |
132 |
Q |
| |
|
|||||||| | |||||||| |
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|
| T |
31152280 |
ttatagagagatttgaacc |
31152298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 27092046 - 27091986
Alignment:
| Q |
362 |
cataacacaaagacaagattctaatttatagcctataagagcatgaggttatagctagcat |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27092046 |
cataacacaaagacaagattctaatttatagcctataagagcatgaggttatagctagcat |
27091986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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