View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17252_high_4 (Length: 349)
Name: NF17252_high_4
Description: NF17252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17252_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 33316109 - 33315808
Alignment:
| Q |
16 |
aaattagtgtcataggttgcttacattgggctcatacaatgcaacatatgagcatttcataaagccaacacaagatgaaggagttttgnnnnnnnnctga |
115 |
Q |
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| T |
33316109 |
aaattattgtcatgggtggcttactttgggctcatacaatgcaacatatgagcgtttcataaagccaacacaaggtgaag-agttttgggaaaaat---a |
33316014 |
T |
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| Q |
116 |
ttatgtgaaaccggtgcctgcaccaaaaagaagacaacctggaaggccaaagaaacaaagaaggaaagatgcatccgagggtccttccggttcaggtaat |
215 |
Q |
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| T |
33316013 |
ttatgtgaaaccggtgcctgcaccaaaaagaagacaacctggaaggccaaagaaacaaacaaggaaagatgcatttgagggtccttccggttcaagtaat |
33315914 |
T |
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| Q |
216 |
gttcggaggtcatatccagtgataacatgttcaaggtgtggtctagaaggtaaccacaataggttcggctgcactaatcaaggtgtgatgtctatgcctc |
315 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
33315913 |
gttcagaggtcatatccagtgctaacatgttcaaggtgtggtctagaaggtaaccacaataggttcggctgcactaatcaagctgtgatgcctatgcctc |
33315814 |
T |
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| Q |
316 |
ccaatt |
321 |
Q |
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| T |
33315813 |
ccaatt |
33315808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 35 - 323
Target Start/End: Original strand, 38983850 - 38984137
Alignment:
| Q |
35 |
cttacattgggctcatacaatgcaacatatgagcatttcataaagccaacacaagatgaaggagttttgnnnnnnnnctgattatgtgaaaccggtgcct |
134 |
Q |
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| T |
38983850 |
cttactttgggctcatacaatgcaacctatgagcatttcataatgccaacacaaggtgaag-agttttgggaaaaaactaattatgttaaaccggtgact |
38983948 |
T |
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| Q |
135 |
gcaccaaaaagaagacaacctggaaggccaaagaaacaaagaaggaaagatgcatccgagggtccttccggttcaggtaatgttcggaggtcatatccag |
234 |
Q |
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| T |
38983949 |
gcaccaaaaagaagacaaccttgaaggccaaagaaacaaagaaggaaatatgcatatgagggtccttcctgttcaagtaatgtctgaaggtcacatccag |
38984048 |
T |
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| Q |
235 |
tgataacatgttcaaggtgtggtctagaaggtaaccacaataggttcggctgcactaatcaaggtgtgatgtctatgcctcccaattgg |
323 |
Q |
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| T |
38984049 |
tgcaaacatgttcaaggtgtggtctagaaggtagccacaataggtttcgctgcactaatcaaggtgtgatgtctatgcctccccattgg |
38984137 |
T |
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