View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17252_high_5 (Length: 253)

Name: NF17252_high_5
Description: NF17252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17252_high_5
NF17252_high_5
[»] chr8 (3 HSPs)
chr8 (36-209)||(39067888-39068061)
chr8 (36-66)||(41361653-41361683)
chr8 (38-66)||(9501516-9501544)
[»] chr5 (2 HSPs)
chr5 (36-85)||(39531565-39531614)
chr5 (36-86)||(32347881-32347931)
[»] chr4 (8 HSPs)
chr4 (33-87)||(20400067-20400121)
chr4 (36-90)||(25658067-25658121)
chr4 (36-88)||(22757001-22757051)
chr4 (35-66)||(7084126-7084157)
chr4 (36-66)||(478172-478202)
chr4 (36-85)||(7083979-7084028)
chr4 (36-68)||(30201945-30201977)
chr4 (37-90)||(51152025-51152080)
[»] chr7 (8 HSPs)
chr7 (36-85)||(21990572-21990621)
chr7 (38-86)||(11832922-11832970)
chr7 (37-85)||(46026209-46026257)
chr7 (35-66)||(9785242-9785273)
chr7 (36-66)||(6667320-6667350)
chr7 (36-66)||(21603378-21603408)
chr7 (34-66)||(2622497-2622529)
chr7 (36-84)||(43847039-43847087)
[»] chr6 (2 HSPs)
chr6 (36-85)||(1302636-1302685)
chr6 (36-66)||(6420025-6420055)
[»] chr2 (7 HSPs)
chr2 (36-84)||(12704596-12704644)
chr2 (36-66)||(36867935-36867965)
chr2 (38-83)||(5754198-5754243)
chr2 (37-66)||(7640501-7640530)
chr2 (36-81)||(12891259-12891304)
chr2 (36-88)||(20561294-20561344)
chr2 (36-84)||(22597042-22597090)
[»] chr3 (3 HSPs)
chr3 (33-88)||(38527165-38527220)
chr3 (36-66)||(11818991-11819021)
chr3 (33-83)||(49628266-49628316)
[»] chr1 (3 HSPs)
chr1 (36-66)||(28678306-28678336)
chr1 (33-66)||(33487197-33487230)
chr1 (37-66)||(37825486-37825515)
[»] scaffold0056 (1 HSPs)
scaffold0056 (36-65)||(74095-74124)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 36 - 209
Target Start/End: Original strand, 39067888 - 39068061
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggggagttaaatttagcttgcttaaattttttcggcagaaaggtttttctatt 135  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39067888 ggtgacggctagggtttgagaagaagagaagtgagataggaagaaagggggagttaaatttagcttgcttaaattttttcggcagaaaggtttttctatt 39067987  T
Q  136 tatttatctaaatgacatcaaccttcaaggtgcgtcaatgctcgatattaaatgagacatgtgtatggtttttc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39067988 tatttatctaaatgacatcaaccttcaaggtgcgtcaatgctcgatattaaatgagacatgtgtatggtttttc 39068061  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 41361683 - 41361653
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaag 66  Q
    |||||||||||||||||||||||||||||||    
T  41361683 ggtgacggctagggtttgagaaggagagaag 41361653  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 9501544 - 9501516
Alignment:
Q  38 tgacggctagggtttgagaaggagagaag 66  Q
    |||||||||||||||||||||||||||||    
T  9501544 tgacggctagggtttgagaaggagagaag 9501516  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 39531565 - 39531614
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggg 85  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  39531565 ggtgacggctagggtttgagaaggagagaagagggagaggaagaaagggg 39531614  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 32347881 - 32347931
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaaggggg 86  Q
    |||||||||||||||||||  |||||||||| | || ||||||||||||||    
T  32347881 ggtgacggctagggtttgatgaggagagaagagagagaggaagaaaggggg 32347931  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 20400067 - 20400121
Alignment:
Q  33 aaaggtgacggctagggtttgagaaggagagaagtgggataggaagaaaggggga 87  Q
    |||||||||  ||||||||||||||||||||||| | ||||||||||||||||||    
T  20400067 aaaggtgacaactagggtttgagaaggagagaagagagataggaagaaaggggga 20400121  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 25658121 - 25658067
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggggagtt 90  Q
    |||||||||||||||||||||||||||||||   || ||||||||||||||||||    
T  25658121 ggtgacggctagggtttgagaaggagagaagatagagaggaagaaagggggagtt 25658067  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 22757051 - 22757001
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggggag 88  Q
    ||||||||||||||||||||||||||||||  | || ||||||||||||||||    
T  22757051 ggtgacggctagggtttgagaaggagagaa--gagagaggaagaaagggggag 22757001  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 7084157 - 7084126
Alignment:
Q  35 aggtgacggctagggtttgagaaggagagaag 66  Q
    ||||||||||||||||||||||||||||||||    
T  7084157 aggtgacggctagggtttgagaaggagagaag 7084126  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 478172 - 478202
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaag 66  Q
    |||||||||||||||||||||||||||||||    
T  478172 ggtgacggctagggtttgagaaggagagaag 478202  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 7083979 - 7084028
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggg 85  Q
    ||||||| ||||||||||||||||||| ||| | || |||||||||||||    
T  7083979 ggtgacgactagggtttgagaaggagaaaagagagagaggaagaaagggg 7084028  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 30201977 - 30201945
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtg 68  Q
    |||||||||||||||||||||||||||| ||||    
T  30201977 ggtgacggctagggtttgagaaggagaggagtg 30201945  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 51152080 - 51152025
Alignment:
Q  37 gtgacggctagggtttgagaaggagaga--agtgggataggaagaaagggggagtt 90  Q
    |||||||||||| |||||||||||||||  || | || ||||||||||||||||||    
T  51152080 gtgacggctaggttttgagaaggagagaagagagagagaggaagaaagggggagtt 51152025  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 21990621 - 21990572
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggg 85  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||    
T  21990621 ggtgacggctagggtttgagaaggagagaagagagagaggaagaaagggg 21990572  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 11832970 - 11832922
Alignment:
Q  38 tgacggctagggtttgagaaggagagaagtgggataggaagaaaggggg 86  Q
    ||||||||||||||||||||||||||||| | || ||||||||||||||    
T  11832970 tgacggctagggtttgagaaggagagaagagagaaaggaagaaaggggg 11832922  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 46026209 - 46026257
Alignment:
Q  37 gtgacggctagggtttgagaaggagagaagtgggataggaagaaagggg 85  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||    
T  46026209 gtgacggctagggtttgagaaggagagaagagagagaggaagaaagggg 46026257  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 9785273 - 9785242
Alignment:
Q  35 aggtgacggctagggtttgagaaggagagaag 66  Q
    ||||||||||||||||||||||||||||||||    
T  9785273 aggtgacggctagggtttgagaaggagagaag 9785242  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 6667350 - 6667320
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaag 66  Q
    |||||||||||||||||||||||||||||||    
T  6667350 ggtgacggctagggtttgagaaggagagaag 6667320  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 21603408 - 21603378
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaag 66  Q
    |||||||||||||||||||||||||||||||    
T  21603408 ggtgacggctagggtttgagaaggagagaag 21603378  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 2622529 - 2622497
Alignment:
Q  34 aaggtgacggctagggtttgagaaggagagaag 66  Q
    ||||||||||| |||||||||||||||||||||    
T  2622529 aaggtgacggcaagggtttgagaaggagagaag 2622497  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 43847087 - 43847039
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaaggg 84  Q
    |||||| ||||||||||||||| |||||||| | || ||||||||||||    
T  43847087 ggtgacagctagggtttgagaatgagagaagagagagaggaagaaaggg 43847039  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 1302685 - 1302636
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggg 85  Q
    ||||||||||||||||||||||||||| ||| | || |||||||||||||    
T  1302685 ggtgacggctagggtttgagaaggagaaaagagagagaggaagaaagggg 1302636  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 6420025 - 6420055
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaag 66  Q
    |||||||||||||||||||||||||||||||    
T  6420025 ggtgacggctagggtttgagaaggagagaag 6420055  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 12704644 - 12704596
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaaggg 84  Q
    ||||||| ||||||||||||||||||||||| | || ||||||||||||    
T  12704644 ggtgacgactagggtttgagaaggagagaagagagagaggaagaaaggg 12704596  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 36867965 - 36867935
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaag 66  Q
    |||||||||||||||||||||||||||||||    
T  36867965 ggtgacggctagggtttgagaaggagagaag 36867935  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 5754243 - 5754198
Alignment:
Q  38 tgacggctagggtttgagaaggagagaagtgggataggaagaaagg 83  Q
    |||||||||||||||||||| |||||||| | || |||||||||||    
T  5754243 tgacggctagggtttgagaatgagagaagagagagaggaagaaagg 5754198  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 7640501 - 7640530
Alignment:
Q  37 gtgacggctagggtttgagaaggagagaag 66  Q
    ||||||||||||||||||||||||||||||    
T  7640501 gtgacggctagggtttgagaaggagagaag 7640530  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 12891259 - 12891304
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaa 81  Q
    ||||||| ||||||||||||||||||||||| | || |||||||||    
T  12891259 ggtgacgactagggtttgagaaggagagaagagagagaggaagaaa 12891304  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 20561294 - 20561344
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggggag 88  Q
    |||||||||||||||||||||||||| |||  | || ||||||||||||||||    
T  20561294 ggtgacggctagggtttgagaaggagggaa--gagagaggaagaaagggggag 20561344  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 22597090 - 22597042
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaagtgggataggaagaaaggg 84  Q
    ||||||| ||||||||||||||||||||||| | || || |||||||||    
T  22597090 ggtgacgactagggtttgagaaggagagaagagagagagaaagaaaggg 22597042  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 38527220 - 38527165
Alignment:
Q  33 aaaggtgacggctagggtttgagaaggagagaagtgggataggaagaaagggggag 88  Q
    |||||||||||| |||||||||||| |||||||| |  | ||||||||||||||||    
T  38527220 aaaggtgacggccagggtttgagaacgagagaagagaaagaggaagaaagggggag 38527165  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 11819021 - 11818991
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaag 66  Q
    |||||||||||||||||||||||||||||||    
T  11819021 ggtgacggctagggtttgagaaggagagaag 11818991  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 49628266 - 49628316
Alignment:
Q  33 aaaggtgacggctagggtttgagaaggagagaagtgggataggaagaaagg 83  Q
    ||||||||| ||||||||||||||| |||||||| | || |||||||||||    
T  49628266 aaaggtgacagctagggtttgagaatgagagaagagagagaggaagaaagg 49628316  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 28678306 - 28678336
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaag 66  Q
    |||||||||||||||||||||||||||||||    
T  28678306 ggtgacggctagggtttgagaaggagagaag 28678336  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 33487197 - 33487230
Alignment:
Q  33 aaaggtgacggctagggtttgagaaggagagaag 66  Q
    |||||||||||||||| |||||||||||||||||    
T  33487197 aaaggtgacggctaggatttgagaaggagagaag 33487230  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 37825486 - 37825515
Alignment:
Q  37 gtgacggctagggtttgagaaggagagaag 66  Q
    ||||||||||||||||||||||||||||||    
T  37825486 gtgacggctagggtttgagaaggagagaag 37825515  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 74124 - 74095
Alignment:
Q  36 ggtgacggctagggtttgagaaggagagaa 65  Q
    ||||||||||||||||||||||||||||||    
T  74124 ggtgacggctagggtttgagaaggagagaa 74095  T

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