View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17252_low_2 (Length: 415)
Name: NF17252_low_2
Description: NF17252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17252_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 24 - 396
Target Start/End: Original strand, 5220618 - 5220990
Alignment:
| Q |
24 |
acgcaaccttcgcctccggcaccgataccaatacactcaaaacataagccgatttatccaccatattcgattcaaaatccgccatcaactcaaccaacac |
123 |
Q |
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| T |
5220618 |
acgcaaccttcgcctccggcaccgataccaatacactcaaaacataagccgatttatccaccatattcgattcaaaatccgccatcaactcaaccaacac |
5220717 |
T |
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| Q |
124 |
cttcattatccccgctttcaccgctctcatcttattctccttcacagaacacagagtatacagcgccgtagacgcgtccttcttcccgcgtattcctcca |
223 |
Q |
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| T |
5220718 |
cttcattatccccgctttcaccgctctcatcttattctccttcacagaacacagagtatacagcgccgtagacgcgtccttcttcccgcgtattcctcca |
5220817 |
T |
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| Q |
224 |
cttcctagaagattcaccaataacggaattgcaccggatcttccaatcgccgccttgttctcttccacctgtaataattagtgttagaacttacaataat |
323 |
Q |
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| T |
5220818 |
cttcctagaagattcaccaataacggaattgcaccggatcttccaatcgccgccttgttctcttccacctgtaataattagtgttagaacttacaataat |
5220917 |
T |
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| Q |
324 |
caacgagaactactaataataattcaccaatataacgagaatcaacctgagatagacgaaggagcgcacaagc |
396 |
Q |
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| T |
5220918 |
caacgagaactactaataataattcaccaatataacgagaatcaacctgagatagacgaaggagcgcacaagc |
5220990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 270
Target Start/End: Complemental strand, 47470104 - 47469911
Alignment:
| Q |
77 |
ttatccaccatattcgattcaaaatccgccatcaactcaaccaacaccttcattatccccgctttcaccgctctcatcttattctccttcacagaacaca |
176 |
Q |
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| T |
47470104 |
ttatccaccatgttcgaatcaaaatccgccattaattcaactaaaggcttcattattccagcttttatcgctctgattttgttctcgttcaccgaacaca |
47470005 |
T |
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| Q |
177 |
gagtatacagcgccgtagacgcgtccttcttcccgcgtattcctccacttcctagaagattcaccaataacggaattgcaccggatcttccaat |
270 |
Q |
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| T |
47470004 |
gcgagtataaagccgttgacgcatcctttttcccgcggattcctccgttttctagaaggttcaccaatgccggaattgcaccacatcttccaat |
47469911 |
T |
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