View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17252_low_3 (Length: 370)
Name: NF17252_low_3
Description: NF17252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17252_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 10407201 - 10407556
Alignment:
| Q |
1 |
gaccttctccaggattgtactatatcccttttggccaaccaatacatccatcttcaacattctatctccttcaaagttgactctgctcatatgcctagca |
100 |
Q |
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| T |
10407201 |
gaccttctccaggattgtactagatcccttttggccaaccaatacatccatcttcaatattctatctcctccaaagttgactctgctcatatgcctagca |
10407300 |
T |
|
| Q |
101 |
ttgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccgagagagcgttgcgtaacaaggtattggacaaactatctgaatgcacgg |
200 |
Q |
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| T |
10407301 |
ttgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccgagagagcgttgcgtaacaaggtattggacaaactatctgaatccacgg |
10407400 |
T |
|
| Q |
201 |
attcaaaattgtcgtaatcacataagatgttacgaggaatgatgaaggaataatgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaaca |
300 |
Q |
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| T |
10407401 |
attcaaaattgtcgtaatcacataagatgtttcgaggaatgatgaaggaataatgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaaca |
10407500 |
T |
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| Q |
301 |
ttcatgtggatnnnnnnnttgtgggatggtgtcagagggttcttcaatattgatga |
356 |
Q |
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| T |
10407501 |
ttcatgtggataaaaaaattgtgggatggtgtcagagggttcttcaatattgatga |
10407556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 10396981 - 10397336
Alignment:
| Q |
1 |
gaccttctccaggattgtactatatcccttttggccaaccaatacatccatcttcaacattctatctccttcaaagttgactctgctcatatgcctagca |
100 |
Q |
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| T |
10396981 |
gaccttctccaggattgtactagatcccttttggccaaccaatacatccatcttcaatattctatctccttcaaagttgactctgctcatatgcttagca |
10397080 |
T |
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| Q |
101 |
ttgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccgagagagcgttgcgtaacaaggtattggacaaactatctgaatgcacgg |
200 |
Q |
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| T |
10397081 |
ttgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccgagagagcgttgcgtaacaaggtattggacaaactacctggatccacag |
10397180 |
T |
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| Q |
201 |
attcaaaattgtcgtaatcacataagatgttacgaggaatgatgaaggaataatgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaaca |
300 |
Q |
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| T |
10397181 |
attccaaatcgtcgtaatcgcataagatgttacgaggaatgatgaaggaataatgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaaca |
10397280 |
T |
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| Q |
301 |
ttcatgtggatnnnnnnnttgtgggatggtgtcagagggttcttcaatattgatga |
356 |
Q |
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| T |
10397281 |
ttcatgtggataaaaaaattgtgggatggtgtcagaggattcttcaatattgatga |
10397336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 114 - 356
Target Start/End: Original strand, 10401959 - 10402201
Alignment:
| Q |
114 |
gaaatagagcgtcttccaacgcttcatcaggaagcaccgagagagcgttgcgtaacaaggtattggacaaactatctgaatgcacggattcaaaattgtc |
213 |
Q |
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| T |
10401959 |
gaaatagcgtgtcttccaacacttcatcaagaagcaccgagaaagcgttgcgcaacatgacattggacaaactatctgtatccacgaagtcaaaatcgtc |
10402058 |
T |
|
| Q |
214 |
gtaatcacataagatgttacgaggaatgatgaaggaataatgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggatnn |
313 |
Q |
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| T |
10402059 |
gtaatcacataagatgttacgaggaatgatgaaggaataatgattaaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggataa |
10402158 |
T |
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| Q |
314 |
nnnnnttgtgggatggtgtcagagggttcttcaatattgatga |
356 |
Q |
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| T |
10402159 |
aaaaattgtgggatgatgtcagaggattcctcaatatggatga |
10402201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 44 - 310
Target Start/End: Original strand, 10429343 - 10429615
Alignment:
| Q |
44 |
acatccatcttcaacattctatctccttcaaagttgactctgctcatatgcctagcattgtcacccataagaaatagagcgtcttccaacgcttcatcag |
143 |
Q |
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| T |
10429343 |
acatccatctccaatattctatatccttcaaagttgactgtgttcatatacctagcgtactcacccataagaagtagggtttcttccaacacttcatgag |
10429442 |
T |
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| Q |
144 |
gaag---caccga---gagagcgttgcgtaacaaggtattggacaaactatctgaatgcacggattcaaaattgtcgtaatcacataagatgttacgagg |
237 |
Q |
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| T |
10429443 |
gaagatccaccgacaagaaagtgttacgcaaaaaggtataggataaactatcttgatccacggattcaaactcatcgtaatcacataagatgttaccagg |
10429542 |
T |
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| Q |
238 |
aatgatgaaggaataatgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtgga |
310 |
Q |
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||| | |||| ||| || |||||||||| ||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
10429543 |
aataaggaagtcatagtggttgaatgaagtcgagtgaaagtggtgaagtttaatgaggaaacattcatgtgga |
10429615 |
T |
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