View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17252_low_5 (Length: 275)

Name: NF17252_low_5
Description: NF17252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17252_low_5
NF17252_low_5
[»] chr5 (3 HSPs)
chr5 (54-265)||(15561855-15562065)
chr5 (59-146)||(27344585-27344672)
chr5 (18-56)||(38927915-38927953)
[»] chr3 (2 HSPs)
chr3 (59-155)||(27982338-27982434)
chr3 (204-258)||(27982485-27982539)
[»] chr7 (4 HSPs)
chr7 (59-155)||(37782797-37782893)
chr7 (18-56)||(3570972-3571010)
chr7 (204-258)||(37782944-37782998)
chr7 (90-143)||(42880449-42880502)
[»] chr8 (4 HSPs)
chr8 (59-157)||(9929834-9929932)
chr8 (63-140)||(42663149-42663226)
chr8 (91-139)||(26812135-26812183)
chr8 (204-258)||(9929730-9929784)
[»] chr1 (3 HSPs)
chr1 (18-56)||(46354341-46354379)
chr1 (91-139)||(35014969-35015017)
chr1 (91-131)||(34026021-34026061)
[»] scaffold0340 (2 HSPs)
scaffold0340 (91-139)||(9388-9436)
scaffold0340 (91-160)||(9985-10054)
[»] chr2 (1 HSPs)
chr2 (59-103)||(22387789-22387833)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 54 - 265
Target Start/End: Complemental strand, 15562065 - 15561855
Alignment:
Q  54 tgacatctagggtgaaccaccaactaagtggttcatggtgaaccatgaataaaaaccattagattatgtcgtcctaccaaatcttatgatgtatcccaca 153  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15562065 tgacatctagggtgaaccaccaactaagtggttgatggtgaaccatgaataaaaacaattagattatgtcgtcctaccaaatcttatgatgtatcccaca 15561966  T
Q  154 cacataannnnnnnncttctttcttctattttaccctcacgaaaatggttaccatcaacctccaaatcaccatcttctaagaacaattttaaatcttgat 253  Q
    |||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15561965 cacat-tttttttttcttctttcttctattttaccctcacgaaaatggttaccatcaacctccaaatcaccatcttctaagaacaattttaaatcttgaa 15561867  T
Q  254 ttattatctctg 265  Q
    ||||||||||||    
T  15561866 ttattatctctg 15561855  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 27344585 - 27344672
Alignment:
Q  59 tctagggtgaaccaccaactaagtggttcatggtgaaccatgaataaaaaccattagattatgtcgtcctaccaaatcttatgatgta 146  Q
    |||| ||||||||| |||| | |||||||||||| |||||||||||||||| || |||| |||| |||||| || |||||||||||||    
T  27344585 tctaaggtgaaccatcaaccatgtggttcatggtaaaccatgaataaaaacaatcagatcatgttgtcctatcagatcttatgatgta 27344672  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 38927915 - 38927953
Alignment:
Q  18 tttcttacccaataaccgtagcagaacttaactttatga 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38927915 tttcttacccaataaccgtagcagaacttaactttatga 38927953  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 27982338 - 27982434
Alignment:
Q  59 tctagggtgaaccaccaactaagtggttcatggtgaaccatgaataaaaaccattagattatgtcgtcctaccaaatcttatgatgtatcccacaca 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||| |||||| || |||||    
T  27982338 tctagggtgaaccaccaactaagtggttcatggtgaaccatgaataaaaaccatcggattatgttgtcctaccagatcttacgatgtagccaacaca 27982434  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 27982485 - 27982539
Alignment:
Q  204 accatcaacctccaaatcaccatcttctaagaacaattttaaatcttgatttatt 258  Q
    |||||||||  |||||||||||||||||||| ||| |||||||||||||||||||    
T  27982485 accatcaactcccaaatcaccatcttctaagcacagttttaaatcttgatttatt 27982539  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 37782797 - 37782893
Alignment:
Q  59 tctagggtgaaccaccaactaagtggttcatggtgaaccatgaataaaaaccattagattatgtcgtcctaccaaatcttatgatgtatcccacaca 155  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||| |  |||||||| |||||| |||||| || |||||    
T  37782797 tctagggtgaaccaccaactaagtggtttatggtgaaccatgaataaaaaccatcggattatcttttcctaccagatcttacgatgtacccaacaca 37782893  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 3570972 - 3571010
Alignment:
Q  18 tttcttacccaataaccgtagcagaacttaactttatga 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3570972 tttcttacccaataaccgtagcagaacttaactttatga 3571010  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 37782944 - 37782998
Alignment:
Q  204 accatcaacctccaaatcaccatcttctaagaacaattttaaatcttgatttatt 258  Q
    |||||||||  |||||||||||||||||||| ||| |||| ||||||||||||||    
T  37782944 accatcaactcccaaatcaccatcttctaagcacagttttgaatcttgatttatt 37782998  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 42880502 - 42880449
Alignment:
Q  90 ggtgaaccatgaataaaaaccattagattatgtcgtcctaccaaatcttatgat 143  Q
    ||||||||||||||||||| ||||||||||||| |||||| || || |||||||    
T  42880502 ggtgaaccatgaataaaaatcattagattatgttgtcctatcagattttatgat 42880449  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 9929932 - 9929834
Alignment:
Q  59 tctagggtgaaccaccaactaagtggttcatggtgaaccatgaataaaaaccattagattatgtcgtcctaccaaatcttatgatgtatcccacacaca 157  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||  |||||| |  |||||||| |||||| |||||| || |||||||    
T  9929932 tctaggatgaaccaccaactaagtggtttatggtgaaccatgaataaaaaccatcggattatcttttcctaccagatcttacgatgtacccaacacaca 9929834  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 42663149 - 42663226
Alignment:
Q  63 gggtgaaccaccaactaagtggttcatggtgaaccatgaataaaaaccattagattatgtcgtcctaccaaatcttat 140  Q
    |||||||| ||||| ||| ||||||||||||||||| ||||||||||||||| ||||||| || |||||| |||||||    
T  42663149 gggtgaacgaccaattaaatggttcatggtgaaccacgaataaaaaccattaaattatgttgtactaccagatcttat 42663226  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 26812183 - 26812135
Alignment:
Q  91 gtgaaccatgaataaaaaccattagattatgtcgtcctaccaaatctta 139  Q
    |||||||||||| ||||||||||||||||||| ||||||||| ||||||    
T  26812183 gtgaaccatgaacaaaaaccattagattatgttgtcctaccagatctta 26812135  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 9929784 - 9929730
Alignment:
Q  204 accatcaacctccaaatcaccatcttctaagaacaattttaaatcttgatttatt 258  Q
    |||||||||  |||||||||||||||||||| ||| |||| ||||||||||||||    
T  9929784 accatcaactcccaaatcaccatcttctaagcacagttttgaatcttgatttatt 9929730  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 46354341 - 46354379
Alignment:
Q  18 tttcttacccaataaccgtagcagaacttaactttatga 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46354341 tttcttacccaataaccgtagcagaacttaactttatga 46354379  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 35014969 - 35015017
Alignment:
Q  91 gtgaaccatgaataaaaaccattagattatgtcgtcctaccaaatctta 139  Q
    |||||||||||| ||||||||||||||||||| ||||||||| ||||||    
T  35014969 gtgaaccatgaacaaaaaccattagattatgttgtcctaccagatctta 35015017  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 34026021 - 34026061
Alignment:
Q  91 gtgaaccatgaataaaaaccattagattatgtcgtcctacc 131  Q
    |||||||||||| |||| |||||||||||||| ||||||||    
T  34026021 gtgaaccatgaaaaaaagccattagattatgttgtcctacc 34026061  T

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Target: scaffold0340 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 9388 - 9436
Alignment:
Q  91 gtgaaccatgaataaaaaccattagattatgtcgtcctaccaaatctta 139  Q
    |||||||||||| |||||| |||||||||||| ||||||||| ||||||    
T  9388 gtgaaccatgaacaaaaactattagattatgttgtcctaccagatctta 9436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 10054 - 9985
Alignment:
Q  91 gtgaaccatgaataaaaaccattagattatgtcgtcctaccaaatcttatgatgtatcccacacacataa 160  Q
    ||||||||||||  ||||||||| |||||||| ||| ||||| ||||||||||  ||||| || ||||||    
T  10054 gtgaaccatgaaagaaaaccattcgattatgttgtcataccagatcttatgatacatccctcatacataa 9985  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 22387789 - 22387833
Alignment:
Q  59 tctagggtgaaccaccaactaagtggttcatggtgaaccatgaat 103  Q
    |||| |||||||||||||| | |||||||||| ||||||||||||    
T  22387789 tctaaggtgaaccaccaaccatgtggttcatgctgaaccatgaat 22387833  T

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