View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17252_low_8 (Length: 239)
Name: NF17252_low_8
Description: NF17252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17252_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 15836101 - 15836322
Alignment:
| Q |
18 |
agtggcctggaatagttgatgcgtcggcacaacttgtgtagtctgtgagtgatgcattatagtgtgaaagatggtttgatccattctttactgcagtttg |
117 |
Q |
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| T |
15836101 |
agtggcctggaattgttgatgcgtcggcacaacttgtgtagtctgtgagtgatacattatagtgtgaaagatggtttgatccattctttactgcagtttg |
15836200 |
T |
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| Q |
118 |
tagctcgacttcatcggttttatctgaatcgatgcttaaaactacgttttttcggcatatgaagttgaattgaggtgccttgttcttgaatcctgctaca |
217 |
Q |
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| T |
15836201 |
tagctcaacttcatcggttttatctgaatcgatgcttaaaactacgttttttcggcatatgaagttgaattgaggtgccttgttcttgaatcctgctaca |
15836300 |
T |
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| Q |
218 |
cggagtatgtcaccaactctgt |
239 |
Q |
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| T |
15836301 |
cggagtatgtcaccaactctgt |
15836322 |
T |
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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 23955220 - 23955327
Alignment:
| Q |
109 |
tgcagtttgtagctcgacttcatcggttttatctgaatcgatgcttaaaactacgttttttcggcatatgaagttgaattgaggtgccttgttcttgaat |
208 |
Q |
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| T |
23955220 |
tgcattttgaagctcaacttcatcagttttgtctgaatcaatgctcaataccacattttttcggcacacaaagttgaattgtggtgctttgttcttgaat |
23955319 |
T |
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| Q |
209 |
cctgctac |
216 |
Q |
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| T |
23955320 |
ccagctac |
23955327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 34381518 - 34381415
Alignment:
| Q |
109 |
tgcagtttgtagctcgacttcatcggttttatctgaatcgatgcttaaaactacgttttttcggcatatgaagttgaattgaggtgccttgttcttgaat |
208 |
Q |
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|||| |||||| ||| |||||||| ||||| ||||| || |||||||| || |||||||||| ||| | ||| ||||||| |||||||||||||||||| |
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| T |
34381518 |
tgcattttgtaactcaacttcatctgttttgtctgattctatgcttaagacaacgttttttctgcaaacaaagctgaattgtggtgccttgttcttgaat |
34381419 |
T |
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| Q |
209 |
cctg |
212 |
Q |
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|||| |
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| T |
34381418 |
cctg |
34381415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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