View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17253_high_13 (Length: 236)

Name: NF17253_high_13
Description: NF17253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17253_high_13
NF17253_high_13
[»] chr2 (9 HSPs)
chr2 (1-173)||(20610995-20611166)
chr2 (1-100)||(20584913-20585012)
chr2 (1-96)||(20895837-20895932)
chr2 (1-121)||(20603227-20603339)
chr2 (1-63)||(20895690-20895752)
chr2 (112-190)||(20895921-20895999)
chr2 (114-190)||(20595772-20595848)
chr2 (141-190)||(20603177-20603226)
chr2 (191-221)||(20896039-20896069)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 20611166 - 20610995
Alignment:
Q  1 caaggttttgcttacattgcttttttgttctctttctgaattttgtttcaactctctttccagataaggtttttgttataactggtttggcatttttgaa 100  Q
    |||||||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||| ||    
T  20611166 caaggttttgcttacattactttttagttctttttgtgaattttgtttcaactctctttccagatagtggttttgttataactggtttggcattttttaa 20611067  T
Q  101 ctctataaccagtttggtattttgtttacattttactgtaattggttttgatttttctattgctcccaaacat 173  Q
    ||| ||||| |||||| ||||||||||||| |||||| | |||||||| |||||||||||||||| |||||||    
T  20611066 ctcaataacgagtttgttattttgtttaca-tttactattattggtttggatttttctattgctctcaaacat 20610995  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 20585012 - 20584913
Alignment:
Q  1 caaggttttgcttacattgcttttttgttctctttctgaattttgtttcaactctctttccagataaggtttttgttataactggtttggcatttttgaa 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||   |||||||||||||||||||||||||||||||    
T  20585012 caaggttttgcttacattgcttttttgttctctttgtgaattttgtttcaactctatttacagatagtatttttgttataactggtttggcatttttgaa 20584913  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 20895837 - 20895932
Alignment:
Q  1 caaggttttgcttacattgcttttttgttctctttctgaattttgtttcaactctctttccagataaggtttttgttataactggtttggcatttt 96  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||||    
T  20895837 caaggttttgcttacattgcttttttgttctctttgtgaattttgtttcaactctctttctagatagtggttttgttataactggtttggcatttt 20895932  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 20603339 - 20603227
Alignment:
Q  1 caaggttttgcttacattgcttttttgttctctttctgaattttgtttcaactctctttccagataaggtttttgttataactggtttggcatttttgaa 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  | |||||||       ||||||||||||||||    
T  20603339 caaggttttgcttacattgcttttttgttctctttgtgaattttgtttcaactctc-ttccagatagtggttttgtt-------gtttggcatttttgaa 20603248  T
Q  101 ctctataaccagtttggtatt 121  Q
    ||||||||| |||||||||||    
T  20603247 ctctataacgagtttggtatt 20603227  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20895690 - 20895752
Alignment:
Q  1 caaggttttgcttacattgcttttttgttctctttctgaattttgtttcaactctctttccag 63  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20895690 caaggttttgcttacattgcttttttgttctctttgtgaattttgtttcaactctctttccag 20895752  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 20895921 - 20895999
Alignment:
Q  112 gtttggtattttgtttacattttactgtaattggttttgatttttctattgctcccaaacatatggcctgtcatttagt 190  Q
    |||||| |||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  20895921 gtttggcattttgtttatattttactgttattggttttgatttttctattgctctcaaacatatggcctctcatttagt 20895999  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 20595848 - 20595772
Alignment:
Q  114 ttggtattttgtttacattttactgtaattggttttgatttttctattgctcccaaacatatggcctgtcatttagt 190  Q
    |||| ||||||||||||||||||| | |||||| | |||||||||||||||| |||||||||||  | |||||||||    
T  20595848 ttggcattttgtttacattttactattattggtatggatttttctattgctctcaaacatatggattttcatttagt 20595772  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 20603226 - 20603177
Alignment:
Q  141 attggttttgatttttctattgctcccaaacatatggcctgtcatttagt 190  Q
    |||||||| ||||| |||||||||| |||||||||||||| |||||||||    
T  20603226 attggtttggatttatctattgctctcaaacatatggcctatcatttagt 20603177  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 20896039 - 20896069
Alignment:
Q  191 aaatataatctcacagttattatgttattag 221  Q
    |||||||||||||||||||||||||||||||    
T  20896039 aaatataatctcacagttattatgttattag 20896069  T

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