View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17253_high_14 (Length: 235)
Name: NF17253_high_14
Description: NF17253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17253_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49722077 - 49721856
Alignment:
| Q |
1 |
aaaccaaaaatgatttagagaactaatttaagccttaaaaaatttgaaaggctaattcccttgttttagtggcagccacttggatcgatcttgtaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49722077 |
aaaccaaaaatgatttagagaactaatttaagccttaaaaaatttggaagtctaattcccttgctttagtggcagccacttggatcgatcttgtaacaaa |
49721978 |
T |
|
| Q |
101 |
gattatttctcactacagttagattataatttcaaaacattattaagtattaacctttcatccctnnnnnnnngtattaacctttcaaaacaagatcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49721977 |
gattatttctcactacagttagattataatttcaaaacattatttagtattaacctttcatccctaaaaaaaagtattaacctttcaaaacaagatcttg |
49721878 |
T |
|
| Q |
201 |
ctttctattctatctaattatt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
49721877 |
ctttctattctatctaattatt |
49721856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University