View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17253_high_15 (Length: 227)
Name: NF17253_high_15
Description: NF17253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17253_high_15 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20585304 - 20585078
Alignment:
| Q |
1 |
gatttttggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctcttgacaagatattgcaatgcttacaattccgacctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20585304 |
gatttttggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctcttgacaagatattgcaatgcttacaattccgacctt |
20585205 |
T |
|
| Q |
101 |
cttttattcaacccttgttcatgtttgaaaatagttctgttttgctgagaacatataccaaatttttcatatataacttaaataatgatagattagattg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20585204 |
cttttattcaacccttgttcatgtctgaaaatagttatgtcctgctgagaacatataccaaatttttcatatataacttaaataatgatagattagattg |
20585105 |
T |
|
| Q |
201 |
ccttccaggtagatatgatttgtatcc |
227 |
Q |
| |
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|||||||||||| ||| |||||||||| |
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| T |
20585104 |
ccttccaggtagttattatttgtatcc |
20585078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 20895398 - 20895614
Alignment:
| Q |
1 |
gatttttggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctcttgacaagatattgcaatgcttacaattccgacctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20895398 |
gatttttggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctcttgacaagatattgcaatgcttacaattccgacctt |
20895497 |
T |
|
| Q |
101 |
cttttattcaacccttgttcatgtttgaaaatagttctgttttgctgagaacatataccaaatttttcatatataacttaaataatgatagattagattg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||| |||||| ||||| |
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| T |
20895498 |
cttttattcaacccttgttcatgtctgaaaatagttctgtaatactgagaacatataacaaatttttcctatataacttaaataatggtagattggattg |
20895597 |
T |
|
| Q |
201 |
ccttccaggtagatatg |
217 |
Q |
| |
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|||||||||||| |||| |
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| T |
20895598 |
ccttccaggtagttatg |
20895614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 20596157 - 20595946
Alignment:
| Q |
1 |
gatttttggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctcttgacaagatattgcaatgcttacaattccgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20596157 |
gatttttggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctcttgacaagatattgcaatgcttacaattccgacctt |
20596058 |
T |
|
| Q |
101 |
cttttattcaacccttgttcatgtttgaaaatagttctgttttgctgagaacatataccaaatttttcatatataacttaaataatgatagattagattg |
200 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||||||||||| |||||||||| |||||| ||||| |
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| T |
20596057 |
cttttattcgacccttgttcatgtctgaaaatagttctgtcctgctgagagcatataacaaatttttcatatataatttaaataatggtagattggattg |
20595958 |
T |
|
| Q |
201 |
ccttccaggtag |
212 |
Q |
| |
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|||||| ||||| |
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| T |
20595957 |
ccttcctggtag |
20595946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 20611458 - 20611249
Alignment:
| Q |
1 |
gatttttggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctcttgacaagatattgcaatgcttacaattccgacctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||| |||| |
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| T |
20611458 |
gatttttggttaatgaaaaaatatggaattgctgagtcctggactagattgatgatcatccctcttaacaagatatggcactgcttacaatcccggcctt |
20611359 |
T |
|
| Q |
101 |
cttttattcaacccttgttcatgtttgaaaatagttctgttttgctgagaacatataccaaatttttcatatataacttaaataatgatagattagattg |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| |||||| ||||| |
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| T |
20611358 |
cttttattcaacccttgttcatgtctgaaaatagttctgtttttctgagaacatatagcaaatttttcctatataacttaaataatggtagattggattg |
20611259 |
T |
|
| Q |
201 |
ccttccaggt |
210 |
Q |
| |
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| |||||||| |
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|
| T |
20611258 |
ctttccaggt |
20611249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 20603631 - 20603422
Alignment:
| Q |
1 |
gatttttggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctcttgacaagatattgcaatgcttacaattccgacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |||||||||| ||||||| |
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| T |
20603631 |
gatttttggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatgatccctcttaacaagatatggcactgcttacaatcccgacctg |
20603532 |
T |
|
| Q |
101 |
cttttattcaacccttgttcatgtttgaaaatagttctgttttgctgagaacatataccaaatttttcatatataacttaaataatgatagattagattg |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||| ||||| |
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|
| T |
20603531 |
attttattcaacccttgttcatgtctgaaaatagttctgttttgcttagaacatatagcaaatttttgctatataacttaaataatggtagattggattg |
20603432 |
T |
|
| Q |
201 |
ccttccaggt |
210 |
Q |
| |
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||||| |||| |
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|
| T |
20603431 |
ccttcaaggt |
20603422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 20578174 - 20578117
Alignment:
| Q |
7 |
tggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctc |
64 |
Q |
| |
|
||||| ||||||| ||||||||||||||| || ||||||| |||||||| ||||||| |
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|
| T |
20578174 |
tggttgatgaaaacatatggagttgctgaatcctggactaagttgatgatgatccctc |
20578117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 44004803 - 44004752
Alignment:
| Q |
13 |
atgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctc |
64 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
44004803 |
atgaaagagtatggagttgctgagtcatggactaaattgatgatcatccctc |
44004752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 23682388 - 23682441
Alignment:
| Q |
11 |
taatgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctc |
64 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
23682388 |
taatgaaagagtatggagttgctgagtcatggactgtattgacgatcatccctc |
23682441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 42414881 - 42414938
Alignment:
| Q |
7 |
tggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctc |
64 |
Q |
| |
|
||||| |||||| | ||||||||| ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
42414881 |
tggttgatgaaacagtatggagttactgagtcttggactaaattgatgatcatccctc |
42414938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 43983408 - 43983351
Alignment:
| Q |
7 |
tggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctc |
64 |
Q |
| |
|
||||| |||||| | |||||||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
43983408 |
tggttgatgaaagagtatggagttgttgagtcatggactaaattcatgatcatccctc |
43983351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 43986211 - 43986160
Alignment:
| Q |
13 |
atgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctc |
64 |
Q |
| |
|
|||||| | |||||||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
43986211 |
atgaaagagtatggagttgttgagtcatggactaaattgatgattatccctc |
43986160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 19567378 - 19567312
Alignment:
| Q |
11 |
taatgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctcttgacaagatatt |
77 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| ||||| |||||| ||| ||| ||| |||| |
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|
| T |
19567378 |
taatgaaagagtatggagttgctgagtcatggactatattgacaatcatctctcatgagaagttatt |
19567312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 42694422 - 42694465
Alignment:
| Q |
20 |
aatatggagttgctgagtcatggactagattgatgatcatccct |
63 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
42694422 |
aatatggagttactgagtcatggactaaattgatgatcatccct |
42694465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 42700093 - 42700144
Alignment:
| Q |
13 |
atgaaaaaatatggagttgctgagtcatggactagattgatgatcatccctc |
64 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
42700093 |
atgaaacaatatggagttgctgagtcatggactaaattgatgttcattcctc |
42700144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 41688838 - 41688782
Alignment:
| Q |
7 |
tggttaatgaaaaaatatggagttgctgagtcatggactagattgatgatcatccct |
63 |
Q |
| |
|
||||| |||||| | ||| |||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
41688838 |
tggttgatgaaagagtatagagttgttgagtcatggactaaattgatgatcatccct |
41688782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 44668689 - 44668640
Alignment:
| Q |
13 |
atgaaaaaatatggagttgctgagtcatggactagattgatgatcatccc |
62 |
Q |
| |
|
|||||| | |||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
44668689 |
atgaaagagtatggagttgttgagtcatggactaaactgatgatcatccc |
44668640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 44687965 - 44687916
Alignment:
| Q |
13 |
atgaaaaaatatggagttgctgagtcatggactagattgatgatcatccc |
62 |
Q |
| |
|
|||||| | |||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
44687965 |
atgaaagagtatggagttgttgagtcatggactaaactgatgatcatccc |
44687916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 45095467 - 45095418
Alignment:
| Q |
13 |
atgaaaaaatatggagttgctgagtcatggactagattgatgatcatccc |
62 |
Q |
| |
|
|||||| | |||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
45095467 |
atgaaagagtatggagttgttgagtcatggactaaaatgatgatcatccc |
45095418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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