View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17253_high_3 (Length: 444)

Name: NF17253_high_3
Description: NF17253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17253_high_3
NF17253_high_3
[»] chr3 (6 HSPs)
chr3 (112-430)||(49723369-49723672)
chr3 (1-127)||(49722253-49722378)
chr3 (281-349)||(38390706-38390776)
chr3 (283-350)||(37743518-37743586)
chr3 (316-407)||(3441940-3442031)
chr3 (73-184)||(37743157-37743268)
[»] chr2 (6 HSPs)
chr2 (73-241)||(9491501-9491669)
chr2 (121-243)||(28646452-28646574)
chr2 (316-368)||(28646644-28646696)
chr2 (321-357)||(9491388-9491424)
chr2 (331-387)||(13872770-13872826)
chr2 (331-387)||(14012895-14012951)
[»] chr8 (7 HSPs)
chr8 (92-394)||(9824639-9824938)
chr8 (101-185)||(41683248-41683331)
chr8 (316-407)||(33367038-33367129)
chr8 (281-346)||(16843875-16843941)
chr8 (318-371)||(21511267-21511320)
chr8 (208-236)||(21511874-21511902)
chr8 (319-359)||(30342964-30343004)
[»] chr6 (3 HSPs)
chr6 (316-394)||(31169415-31169493)
chr6 (73-231)||(32318020-32318179)
chr6 (319-359)||(18986781-18986821)
[»] chr4 (6 HSPs)
chr4 (282-407)||(52878741-52878868)
chr4 (1-57)||(27991003-27991060)
chr4 (279-406)||(29067625-29067753)
chr4 (320-406)||(27990183-27990269)
chr4 (11-57)||(9021791-9021839)
chr4 (316-352)||(4394488-4394524)
[»] chr1 (2 HSPs)
chr1 (73-188)||(12685483-12685598)
chr1 (377-406)||(26042327-26042356)
[»] chr5 (2 HSPs)
chr5 (316-359)||(34770378-34770421)
chr5 (328-388)||(12850010-12850070)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 112 - 430
Target Start/End: Original strand, 49723369 - 49723672
Alignment:
Q  112 aactattactaaataatatctatatcatatattatttcttaacatatattatcaactaaactaaatttttgtttaaagaaattcatgtgctattgggatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||| ||||||||| ||    
T  49723369 aactattactaaataatatctatatcatatattatttcttaacatatattatcaact-------------gtttaaagaaattcatgcgctattggggtt 49723455  T
Q  212 gagtctaacggaaggagttagactctcacaacctgatgaagaatcaatggttcaaactctaatatggaacgatattcatatttagtgtatgatatgtctc 311  Q
    |||||||||||||||||||||||| ||||||||||| |||   |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  49723456 gagtctaacggaaggagttagactttcacaacctgacgaa---tcaatggttcaaactctaatatagaatgatattcatatttagtgtatgacatgtctc 49723552  T
Q  312 acataaa-ttacatatttaatgttcttaatttttatgtttctttgtcaaaacatttaaaatacctcaatttaaaattcgctttagacctataaatactaa 410  Q
    ||||||| |||||||||||||||||||||||||| | ||||||| |||  ||||||||||||||||||||||||||||| |||||||||| ||||| |||    
T  49723553 acataaaattacatatttaatgttcttaatttttgtatttctttatcagcacatttaaaatacctcaatttaaaattcgttttagacctacaaatagtaa 49723652  T
Q  411 tggattagaccgaccctttg 430  Q
    |||||||| |||||||||||    
T  49723653 tggattagtccgaccctttg 49723672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 49722253 - 49722378
Alignment:
Q  1 ttgtatgtatccaaaatttgcaaaagtaaaaagtaatttatatttttgttagaattctttnnnnnnnnnnnnttgtgttagaattaatattacttcgttg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||    
T  49722253 ttgtatgtatccaaaatatgcaaaagtaaaaagtaatttatatttttgttagaattcttt-caaaaaaaaaattgtgttagaattaatattacttcgttg 49722351  T
Q  101 tttcaaggtttaactattactaaataa 127  Q
    |||||||||||||||||||||||||||    
T  49722352 tttcaaggtttaactattactaaataa 49722378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 38390706 - 38390776
Alignment:
Q  281 cgatattcatatttagtgtatgatatgtctcacat--aaattacatatttaatgttcttaatttttatgtt 349  Q
    ||||| ||||||||||||| |||||||||| | ||  |||||| |||||||||||||||||||||||||||    
T  38390706 cgatactcatatttagtgtctgatatgtcttagattaaaattatatatttaatgttcttaatttttatgtt 38390776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 37743518 - 37743586
Alignment:
Q  283 atattcatatttagtgtatgatatgtctcacataaa-ttacatatttaatgttcttaatttttatgttt 350  Q
    ||||||||||||||||||||  |||  ||| ||||| |||||||||||||||||||||||| |||||||    
T  37743518 atattcatatttagtgtatgtcatgcttcaaataaaattacatatttaatgttcttaatttctatgttt 37743586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 3441940 - 3442031
Alignment:
Q  316 aaattacatatttaatgttcttaatttttatgtttctttgtcaaaacatttaaaatacctcaatttaaaattcgctttagacctataaatac 407  Q
    |||||||||||||  ||||||||||||||||||||   |||||| ||| |||||| | || |||||||| || | |||||||||| ||||||    
T  3441940 aaattacatattttgtgttcttaatttttatgttttcatgtcaagacacttaaaagatcttaatttaaagtttgttttagacctacaaatac 3442031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 184
Target Start/End: Original strand, 37743157 - 37743268
Alignment:
Q  73 ttgtgttagaatt-aatattacttcgttgtttcaaggtttaactattactaaataatatctatatcatatattatttcttaacatatattatcaactaaa 171  Q
    |||| |||||||| ||||||| || | | |||||||||||||  |||  | |||||| ||||||| | || |||||| || ||||||||||| || ||||    
T  37743157 ttgtcttagaattcaatattagtttgctatttcaaggtttaataattgattaataatgtctatattaaatgttattt-ttgacatatattataaattaaa 37743255  T
Q  172 ctaaatttttgtt 184  Q
    |||||||||||||    
T  37743256 ctaaatttttgtt 37743268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 9491669 - 9491501
Alignment:
Q  73 ttgtgttagaatt-aatattacttcgttgtttcaaggtttaactattactaaataatatctatatcatatattatttcttaacatatattatcaactaaa 171  Q
    ||||||||||||| |||||||||| ||| ||||||||||| |  |||  |||||||| |||| || | ||||||||| | |||||||||||| || ||||    
T  9491669 ttgtgttagaattcaatattactttgttatttcaaggttttaaaattggtaaataatgtctacattaaatattattt-taaacatatattattaattaaa 9491571  T
Q  172 ctaaatttttgtttaaagaaattcatgtgctattgggattgagtctaacggaaggagttagactctcaca 241  Q
    || |||||||||||||| |||||| |  | || || | ||||||  |||||||||||||||| |||||||    
T  9491570 ctgaatttttgtttaaaaaaattcttacgttaatgtggttgagttcaacggaaggagttagattctcaca 9491501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 28646452 - 28646574
Alignment:
Q  121 taaataatatctatatcatatattatttcttaacatatattatcaactaaactaaatttttgtttaaagaaa-ttcatgtgctattgggattgagtctaa 219  Q
    |||||||| | ||||| | ||||||||| | |||||||||||| || ||||||||||||||| ||  ||||| ||| ||  ||| || ||| ||||||||    
T  28646452 taaataatgtatatattaaatattattt-tcaacatatattattaattaaactaaatttttgcttttagaaagttcttgctctaatgtgatggagtctaa 28646550  T
Q  220 cggaaggagttagactctcacaac 243  Q
    ||||| ||| ||||||||||||||    
T  28646551 cggaacgaggtagactctcacaac 28646574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 28646644 - 28646696
Alignment:
Q  316 aaattacatatttaatgttcttaatttttatgtttctttgtcaaaacatttaa 368  Q
    |||||||||||||| ||| |||| |||||||||||||||||||| ||| ||||    
T  28646644 aaattacatatttagtgtccttagtttttatgtttctttgtcaacacacttaa 28646696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 9491424 - 9491388
Alignment:
Q  321 acatatttaatgttcttaatttttatgtttctttgtc 357  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  9491424 acatatttagtgttcttaatttttatgtttatttgtc 9491388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 13872826 - 13872770
Alignment:
Q  331 tgttcttaatttttatgtttctttgtcaaaacatttaaaatacctcaatttaaaatt 387  Q
    |||| |||||||||| |||||||||| || ||| ||||||| ||| |||||||||||    
T  13872826 tgttattaatttttacgtttctttgtgaacacacttaaaatgcctgaatttaaaatt 13872770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 14012951 - 14012895
Alignment:
Q  331 tgttcttaatttttatgtttctttgtcaaaacatttaaaatacctcaatttaaaatt 387  Q
    |||| |||||||||| |||||||||| || ||| ||||||| ||| |||||||||||    
T  14012951 tgttattaatttttacgtttctttgtgaacacacttaaaatgcctgaatttaaaatt 14012895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 394
Target Start/End: Complemental strand, 9824938 - 9824639
Alignment:
Q  92 acttcgttgtttcaaggtttaactattactaaataatatctatatcatatattatttcttaacatatattatcaactaaactaaatttttgtttaaagaa 191  Q
    |||| ||| ||| |||||||||| |||  |||||||| || ||||   ||||||||| | |||||||||||| || ||||||||||||||||||||| ||    
T  9824938 actttgttattttaaggtttaacaattggtaaataatgtcaatatttaatattattt-tcaacatatattattaattaaactaaatttttgtttaaaaaa 9824840  T
Q  192 attcatgtgctattgggattgagtctaacggaaggagttagactctcacaacctgatgaagaatcaatggttcaaactctaatatggaacgatattcata 291  Q
     ||| |   ||| || | ||||||||||| |||| ||||| ||||||||||||   | | |||||||| ||| ||||| | |   |||  ||||   |||    
T  9824839 gttcttacactaatgagcttgagtctaacagaagaagttatactctcacaacc---tcacgaatcaat-gtttaaactttgactaggagtgatacctata 9824744  T
Q  292 tttagtgtatgatatgtctcacata-aattacatatttaatgttcttaatttttatgtttctttgtcaaaaca-tttaaaatacctcaatttaaaattcg 389  Q
    |||||||| ||| ||  |||| ||| ||||||| |||||  ||| ||||||||||||||||| |||||| ||| || ||||| |||||||||||||||||    
T  9824743 tttagtgtttgacatacctcaaatataattacagatttatagtttttaatttttatgtttctctgtcaacacacttaaaaatgcctcaatttaaaattcg 9824644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 41683248 - 41683331
Alignment:
Q  101 tttcaaggtttaactattactaaataatatctatatcatatattatttcttaacatatattatcaactaaactaaatttttgttt 185  Q
    ||||||||||||||| ||| |||||||| ||||||| | ||||||||| | |||| ||||||| || ||||||||||||||||||    
T  41683248 tttcaaggtttaacttttagtaaataatgtctatattaaatattattt-tcaacaaatattattaattaaactaaatttttgttt 41683331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Complemental strand, 33367129 - 33367038
Alignment:
Q  316 aaattacatatttaatgttcttaatttttatgtttctttgtcaaaacatttaaaatacctcaatttaaaattcgctttagacctataaatac 407  Q
    |||||||| ||||| |||| ||||||||||| ||||| | |||| ||| |||||||  |||||||||||||||| |||  ||||||||||||    
T  33367129 aaattacacatttagtgttattaatttttatatttctatatcaacacacttaaaatgtctcaatttaaaattcgttttcaacctataaatac 33367038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 16843875 - 16843941
Alignment:
Q  281 cgatattcatatttagtgtatgatatgtctcacataaa-ttacatatttaatgttcttaatttttat 346  Q
    |||||| |||||||| |||  |||||| |||| ||||| ||||| ||||||||||||||||||||||    
T  16843875 cgatatccatatttaatgtccgatatgcctcaaataaaattacacatttaatgttcttaatttttat 16843941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 21511320 - 21511267
Alignment:
Q  318 attacatatttaatgttcttaatttttatgtttctttgtcaaaacatttaaaat 371  Q
    ||||||||||||||||| || |||||||||||||||| |||  ||| |||||||    
T  21511320 attacatatttaatgttttttatttttatgtttctttatcaccacacttaaaat 21511267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 21511902 - 21511874
Alignment:
Q  208 gattgagtctaacggaaggagttagactc 236  Q
    |||||||||||||||||||||||||||||    
T  21511902 gattgagtctaacggaaggagttagactc 21511874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 30342964 - 30343004
Alignment:
Q  319 ttacatatttaatgttcttaatttttatgtttctttgtcaa 359  Q
    ||||| ||||| |||||||||||||||| ||||||||||||    
T  30342964 ttacacatttactgttcttaatttttatatttctttgtcaa 30343004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 394
Target Start/End: Original strand, 31169415 - 31169493
Alignment:
Q  316 aaattacatatttaatgttcttaatttttatgtttctttgtcaaaacatttaaaatacctcaatttaaaattcgcttta 394  Q
    |||||| | ||||| ||||||||||||||| |||| | |||||| ||| ||||||| ||||||||||||||||||||||    
T  31169415 aaattatacatttagtgttcttaatttttaagtttttatgtcaacacacttaaaatgcctcaatttaaaattcgcttta 31169493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 32318020 - 32318179
Alignment:
Q  73 ttgtgttagaatt-aatattacttcgttgtttcaaggtttaactattactaaataatatctatatcatatattatttcttaacatatattatcaactaaa 171  Q
    |||| |||||||| |||||||||| | | ||||||| ||||||  ||  |||||||| ||||||| | | ||||| | |  ||||||||||| |||||||    
T  32318020 ttgttttagaattcaatattactttgctatttcaagttttaacggttgataaataatgtctatattaaaaattatatttggacatatattattaactaaa 32318119  T
Q  172 ctaaatttttgtttaaagaaattcatgtgctattgggattgagtctaacggaaggagtta 231  Q
    ||||||||||| || || || ||  ||  ||| |||| |||||||||| | |||||||||    
T  32318120 ctaaatttttgctttaaaaagttattgcactaatggggttgagtctaatgaaaggagtta 32318179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 18986821 - 18986781
Alignment:
Q  319 ttacatatttaatgttcttaatttttatgtttctttgtcaa 359  Q
    ||||| ||||| |||||||||||||||| ||||||||||||    
T  18986821 ttacacatttactgttcttaatttttatatttctttgtcaa 18986781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 407
Target Start/End: Complemental strand, 52878868 - 52878741
Alignment:
Q  282 gatattcatatttagtgtatgatatgtctcacataa-attacatatttaatgttcttaatttttatgtttctttgtcaaaacatttaaaatacctcaatt 380  Q
    |||||| ||||||||||| ||| ||| |||| |||| ||||   ||||| |||||||||||||||| || || |||||| ||| ||||||| | ||||||    
T  52878868 gatatttatatttagtgtctgacatgcctcaaataatattattgatttattgttcttaatttttatattactatgtcaatacacttaaaatgcatcaatt 52878769  T
Q  381 t-aaaattcgctttagacctataaatac 407  Q
    | ||||||||||||||| ||| ||||||    
T  52878768 tgaaaattcgctttagagctacaaatac 52878741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27991060 - 27991003
Alignment:
Q  1 ttgtatgtatccaaaatttgcaaaagtaaaaa-gtaatttatatttttgttagaattc 57  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  27991060 ttgtatgcatccaaaatatgcaaaagtaaaaaagtaatttatatttgtgttagaattc 27991003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 406
Target Start/End: Complemental strand, 29067753 - 29067625
Alignment:
Q  279 aacgatattcatatttagtgtatgatatgtctcacataaatt-acatatttaatgttcttaatttttatgtttctttgtcaaaacatttaaaatacctca 377  Q
    ||||||| ||||||||||||| ||| ||  |||| |||||   ||| |||||| |||||||||||||||||||||||||||  | ||||||||  | |||    
T  29067753 aacgataatcatatttagtgtttgacatacctcaaataaaaccacacatttaaagttcttaatttttatgtttctttgtcaccatatttaaaaggcatca 29067654  T
Q  378 atttaaaattcgctttagacctataaata 406  Q
     || | |||||||||||| |||| |||||    
T  29067653 tttcataattcgctttaggcctacaaata 29067625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 27990269 - 27990183
Alignment:
Q  320 tacatatttaatgttcttaatttttatgtttctttgtcaaaacatttaaaatacctcaatttaaaattcgctttagacctataaata 406  Q
    |||| ||||| |||||||| |||||||||||   |||||| ||| |||||||| || |||||||| ||||| |||| |||| |||||    
T  27990269 tacacatttagtgttcttactttttatgttttcatgtcaacacacttaaaatagcttaatttaaagttcgcattaggcctacaaata 27990183  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 9021791 - 9021839
Alignment:
Q  11 ccaaaatttgcaaaagtaaaa--agtaatttatatttttgttagaattc 57  Q
    ||||||| |||||||||||||  |||||||||||||| |||||||||||    
T  9021791 ccaaaatatgcaaaagtaaaaaaagtaatttatatttgtgttagaattc 9021839  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 4394488 - 4394524
Alignment:
Q  316 aaattacatatttaatgttcttaatttttatgtttct 352  Q
    |||||||| |||||||| |||||||||||||||||||    
T  4394488 aaattacacatttaatggtcttaatttttatgtttct 4394524  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 12685483 - 12685598
Alignment:
Q  73 ttgtgttagaatt-aatattacttcgttgtttcaaggtttaactattactaaataatatctatatcatatattatttcttaacatatattatcaactaaa 171  Q
    |||||||| |||| ||| |||||| | | |||||| ||||||| |||  |||||||| ||||||| | | |||||| || || ||||||||| || ||||    
T  12685483 ttgtgttacaattcaattttactttgctatttcaatgtttaacaattcataaataatgtctatattaaacattatt-ctcaatatatattattaattaaa 12685581  T
Q  172 ctaaatttttgtttaaa 188  Q
    |||||||||||||||||    
T  12685582 ctaaatttttgtttaaa 12685598  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 26042356 - 26042327
Alignment:
Q  377 aatttaaaattcgctttagacctataaata 406  Q
    ||||||||||||||||||||||||||||||    
T  26042356 aatttaaaattcgctttagacctataaata 26042327  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 359
Target Start/End: Complemental strand, 34770421 - 34770378
Alignment:
Q  316 aaattacatatttaatgttcttaatttttatgtttctttgtcaa 359  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||    
T  34770421 aaattacatatttaaggttcttaaattttatgtttctatgtcaa 34770378  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 12850010 - 12850070
Alignment:
Q  328 taatgttcttaatttttatgtttctttgtcaaaacatttaaaatacctcaatttaaaattc 388  Q
    ||||||| |||||||||||||||||   |||  ||| |||||| |||||||||||||||||    
T  12850010 taatgttgttaatttttatgtttctcaatcatgacacttaaaagacctcaatttaaaattc 12850070  T

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