View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17253_high_4 (Length: 404)
Name: NF17253_high_4
Description: NF17253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17253_high_4 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 197 - 404
Target Start/End: Original strand, 8025808 - 8026015
Alignment:
| Q |
197 |
ggaggataaagatacgcatagcaaaagtggatcgatggaagtacatgaacgcactttgacactcaagtgattatttgagcaagaaaggggggtttaagga |
296 |
Q |
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| T |
8025808 |
ggaggataaagttacgcatagcgaaagtgggtcgatggaagtacatgcacgcactccgacactcaagtgattatttgagcaagaaaggggggtttaagga |
8025907 |
T |
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| Q |
297 |
agaagaatgcataccttgtgagcttgtcaacaactccttaagaatgacacccatgaatattctaaatgattgtcgttacgaaccgtagggtcattacgtg |
396 |
Q |
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| T |
8025908 |
agaagaatgtataccttgtgagcttgtcaagaactccttatgaatgacacctatgaatattttaaatgattgtcgttacgaaccgtagggtcattatgtg |
8026007 |
T |
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| Q |
397 |
tcttcaat |
404 |
Q |
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|||||||| |
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| T |
8026008 |
tcttcaat |
8026015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 24975 - 24798
Alignment:
| Q |
1 |
catatcgaatttgcaatgaagagacaatttttatgacactaaaatatactctaaaatagcttacatgcatcatgagtcttaacaagttatctacgcttgg |
100 |
Q |
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| T |
24975 |
catattgaatttgcaataaagagacaatttttatgacactaaaatctactttaaaatagcttacatgcatcatgagtcttaacaagttatctacccttgg |
24876 |
T |
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| Q |
101 |
atttgataataactaactaaaatcaaaatacctacatatgttttccagatactaaaatgatttgaccaagtaaatgat |
178 |
Q |
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| T |
24875 |
atttgatagtaactaactaaaatcagaatatctacgtatgttttccagatactaatatgatttgaccaactaaatgat |
24798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 1085052 - 1085199
Alignment:
| Q |
31 |
ttatgacactaaaatatactctaaaatagcttacatgcatcatgagtcttaacaagttatctacgcttggatttgataataactaactaaaatcaaaata |
130 |
Q |
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| T |
1085052 |
ttatgatactaaaatctactttaaaataacttacatgcataatgagtcttaacaagctatctacccttggatttgatagaaactaactaaaatcaaaata |
1085151 |
T |
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| Q |
131 |
cctacatatgttttccagatactaaaatgatttgaccaagtaaatgat |
178 |
Q |
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| T |
1085152 |
cctacatatgttttccaaatattgatatgatttgaccaagtaaatgat |
1085199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 24997601 - 24997459
Alignment:
| Q |
31 |
ttatgacactaaaatatactctaaaatagcttacatgcatcatgagtcttaacaagttatctacgcttggatttgataataactaactaaaatcaaaata |
130 |
Q |
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| T |
24997601 |
ttatgatactaaaatctactttaatatcacttacatgcataatgagtcttaacaagctatctacccttggatttgatagaaactaactaaaatcaaaata |
24997502 |
T |
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| Q |
131 |
cctacatatgttttccagatactaaaatgatttgaccaagtaa |
173 |
Q |
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| T |
24997501 |
cctacatatgttttccaaatactgatatgatttgaccaagtaa |
24997459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 11352224 - 11352083
Alignment:
| Q |
31 |
ttatgacactaaaatatactctaaaatagcttacatgcatcatgagtcttaacaagttatctacgcttggatttgataataactaactaaaatcaaaata |
130 |
Q |
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| T |
11352224 |
ttatgatactaaaatctactttaaaataacttacatgcataatgagtcttaacaagctatctacccttggatttgatagaaactaactaaaat-aaaata |
11352126 |
T |
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| Q |
131 |
cctacatatgttttccagatactaaaatgatttgaccaagtaa |
173 |
Q |
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| T |
11352125 |
cctacatatgttttccaaatactgatatgatttgaccaagtaa |
11352083 |
T |
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