View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17253_low_10 (Length: 252)
Name: NF17253_low_10
Description: NF17253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17253_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 18421261 - 18421040
Alignment:
| Q |
19 |
acatttgttagagtcatgccgctaaacgcactgcattaaggttgttcaaacacggacggacctagtttaatactttcttttgtcacatttataaataaaa |
118 |
Q |
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| T |
18421261 |
acatttgttcgagtcatgccgctagacacactgcattaaggttgttcaaacacggacggacctagtttaatactttctttggtcacatttataaacaaaa |
18421162 |
T |
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| Q |
119 |
attcattaaataactggtataacgagactatattatagttcaaatttattagtcattcaatgaatctaaaaatcaatatttacttataaatgtgacgaga |
218 |
Q |
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| T |
18421161 |
attcatcaaataactggtatatcgagactatattatagttcaaatttattagtcattcaatgaatctaaaaatcaatatttacttataaatgtgacgaga |
18421062 |
T |
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| Q |
219 |
atgagtactctcctttgctact |
240 |
Q |
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||||||||||||||||| |||| |
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| T |
18421061 |
atgagtactctcctttgttact |
18421040 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 45411051 - 45410953
Alignment:
| Q |
119 |
attcattaaataactggtataacgagactatattatagttcaaatttattagtcattcaatgaatct---aaaaatcaatatttacttataaatgtgac |
214 |
Q |
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| T |
45411051 |
attcattaaataactgatgtatcgggataatattatagtccagatatatcagttattcaacgaatctgaaaaaaaacaatatttacttataaatgtgac |
45410953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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