View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17253_low_2 (Length: 493)
Name: NF17253_low_2
Description: NF17253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17253_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 40444004 - 40444369
Alignment:
| Q |
10 |
attattcttagcattcttgtatatgaggtataagatcatttgagagacgcctaataaaaatcccaacccatttggcagctaataatagaaaaatacaaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40444004 |
attattcttagcattcttgtatatgaggtataagatcatttgagagacgcctaataaaaatcccaacccatttggcagctaataatagaaaaatacaaaa |
40444103 |
T |
|
| Q |
110 |
cattaatcagttttattgctttcagccatacatcataaaagaaaaattcattaataggatgagtaaattaaatatattttatacttaccataatgtactt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40444104 |
cattaatcagttttattgctttcagccatacatcataaaagaaaaattcattaataggatgagtaaattaaatatattttatacttaccataatgtactt |
40444203 |
T |
|
| Q |
210 |
atccttgtcaaagaagccatagaaaaaccacatggtggcacagatagtaagaaacaatgacaatggaaatggcatgtactctacacttcttgtttttatc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40444204 |
atccttgtcaaagaagccatagaaaaaccacatggtggcacagatagtaagaaacaatgacaatggaaatggcatgtactctacacttcttgtttttatc |
40444303 |
T |
|
| Q |
310 |
accttcttctgcaattcatttacaaattttaaaattaaatctcctttcattcaatgaaacacacgt |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40444304 |
accttcttctgcaattcatttacaaattttaaaattaaatctcctttcattcaatgaaacacacgt |
40444369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 394 - 474
Target Start/End: Original strand, 40444402 - 40444482
Alignment:
| Q |
394 |
tggataaaaagattgcgtcactactagnnnnnnnttggattagaacaaataccattatacttaaaggagcagcaaacattc |
474 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40444402 |
tggataaaaagattgcgtcactactagaaaaaaattggattagaacaaataccattatacttaaaggagcagcaaacattc |
40444482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 145 - 360
Target Start/End: Complemental strand, 1517350 - 1517136
Alignment:
| Q |
145 |
taaaagaaaaattcattaataggatgagtaaattaaatatattttatacttaccataatgtacttatccttgtcaaagaagccatagaaaaaccacatgg |
244 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1517350 |
taaaagaaaaattaattaataggatgagtaaattaaatattttatatactcaccataatgtagttatccttgtcaaagagaccatagaaaaaccacatgg |
1517251 |
T |
|
| Q |
245 |
tggcacagatagtaagaaacaatgacaatggaaatggcatgtactctacacttcttgtttttatcaccttcttctgcaattcatttacaaattttaaaat |
344 |
Q |
| |
|
||||||||| ||||||||| ||||| || | ||||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
1517250 |
tggcacagagagtaagaaataatgataaagaaaatggcatgtactcaacacttcttgttcttatcaccttcctctgcaattcatgtacaaatttt-aaat |
1517152 |
T |
|
| Q |
345 |
taaatctcctttcatt |
360 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
1517151 |
taaatctcttttcatt |
1517136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 1517524 - 1517446
Alignment:
| Q |
11 |
ttattcttagcattcttgtatatgaggtataagatcatttgagagacgcctaataaaaatcccaacccatttggcagct |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| ||| |||||||||||| |
|
|
| T |
1517524 |
ttattcttagcattcttgtatatgaggtataagatcatttgagagacaccaaatagaaatcctaacacatttggcagct |
1517446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University