View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17253_low_7 (Length: 260)
Name: NF17253_low_7
Description: NF17253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17253_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 1249962 - 1249727
Alignment:
| Q |
18 |
tagttaactaccatcgaaaagaacaaacaataattaattacggttctaaacaaaaacctcattttcatgtattttnnnnnnnnnnnncatgcgaaaaaag |
117 |
Q |
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| T |
1249962 |
tagttaactaccatcgaaaagaacaaacagtaattaattacggttctaaacaaaaacctcattttcatgtattttaaaaaaaaaa--catgcgaaaaaag |
1249865 |
T |
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| Q |
118 |
caattttcttaatatagtagtgatagatttaccaaactactggcaacc-aaattaaatggcggcctactctcctttccctatcatgccatgcaatatcgt |
216 |
Q |
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| T |
1249864 |
caatttttttaatatagtagtgatagatttaccaaactactggcaaccaaaattaaat---ggccaactctcctttccctatcatgccatgc---atcgt |
1249771 |
T |
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| Q |
217 |
cattgctcagcactacgtacattgcacacactacgtgcatgcat |
260 |
Q |
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| T |
1249770 |
cattgctcagcactacgtacattgcacacactacgtgcatgcat |
1249727 |
T |
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