View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17253_low_8 (Length: 259)
Name: NF17253_low_8
Description: NF17253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17253_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 1249430 - 1249680
Alignment:
| Q |
9 |
agcagagactaaaattgtttgcaagatatataattttgaagatgttaatgcaaattttttcatggagatgaaaaatgaaacttaataatttcatggagac |
108 |
Q |
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| T |
1249430 |
agcagagactaaaattgtttgcaaaatatataattttgaagatgttaatgcaaattttttcatggagatgaaaaatgaaacttaataatttcatggagac |
1249529 |
T |
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| Q |
109 |
aaaaaacgtatttaagttctatagacttgctagattctttgtataggagaggtgtannnnnnnnggaaatatgtttcacgtgtggttgaaattgaaatgc |
208 |
Q |
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| T |
1249530 |
aaaaaacgtatttaagttctatagacttgctagattctttgtataggagaggtgtattttttttggaaatatgtttcacgtgtggttgaaattgaaatgc |
1249629 |
T |
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| Q |
209 |
aagtttatgttttgctaagcaattttggaaggatatatggagtgagtagtt |
259 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1249630 |
aagtttatcttttgctaagcaattttggaaggatatatggagtgagtagtt |
1249680 |
T |
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