View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17254_high_6 (Length: 302)
Name: NF17254_high_6
Description: NF17254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17254_high_6 |
 | |
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| [»] scaffold1526 (1 HSPs) |
| | |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0642 (2 HSPs) |
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| [»] scaffold0105 (2 HSPs) |
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| [»] scaffold0345 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 3379213 - 3378924
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn------tcaaggaaaacaatccataacttgaaatgaattgattgacatg |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
3379213 |
tgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatcaaggaaaacaatccataacttgaaatgaattaattgacatg |
3379114 |
T |
|
| Q |
95 |
gctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaaca-tnnnnnnnnnnnnnnggtc |
193 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
3379113 |
gctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacattaaaaagaaaaaaaaggtg |
3379014 |
T |
|
| Q |
194 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3379013 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaataataaa |
3378924 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 299 - 589
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn------tcaaggaaaacaatccataacttgaaatgaattgattgacatg |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
299 |
tgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatcaaggaaaacaatccataacttgaaatgaattaattgacatg |
398 |
T |
|
| Q |
95 |
gctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat--nnnnnnnnnnnnnnggt |
192 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
399 |
gctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaaagaaaaaaaaaggt |
498 |
T |
|
| Q |
193 |
ctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
499 |
gcgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 44496481 - 44496190
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-------tcaaggaaaacaatccataacttgaaatgaattgattgacat |
93 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
44496481 |
tgacatttatatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaattcaaggaaaacaatccataaattgaaatgaattaattgacat |
44496382 |
T |
|
| Q |
94 |
ggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat--nnnnnnnnnnnnnngg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44496381 |
ggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaaagaaaaaaaaagg |
44496282 |
T |
|
| Q |
192 |
tctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
283 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44496281 |
tgcgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
44496190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 52983 - 53275
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-----tcaaggaaaacaatccataacttgaaatgaattgattgacatgg |
95 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52983 |
tgacatttacatataatccattaaaatacacattggatgtttgaagaaaaaaaaaatcaaggaaaacaatccataacttgaaatgaattaattgacatgg |
53082 |
T |
|
| Q |
96 |
ctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat-----nnnnnnnnnnnnnng |
190 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53083 |
ctcttgcatactaacaatgcccttcacagtacatataacttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaaagaaaaagaaaaaag |
53182 |
T |
|
| Q |
191 |
gtctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
283 |
Q |
| |
|
|| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53183 |
gtgtgcatgaaggtgcaaagtccaaattttgctgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaatcaaagaataaa |
53275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 4996 - 4832
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-------tcaaggaaaacaatccataacttgaaatgaattgattgacat |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
4996 |
tgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaaatcaaggaaaacaatccataacatgaaatgaattaattgacat |
4897 |
T |
|
| Q |
94 |
ggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4896 |
ggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
4832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 4821 - 4732
Alignment:
| Q |
194 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4821 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
4732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 24072 - 24236
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-------tcaaggaaaacaatccataacttgaaatgaattgattgacat |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
24072 |
tgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaaatcaaggaaaacaatccataacatgaaatgaattaattgacat |
24171 |
T |
|
| Q |
94 |
ggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24172 |
ggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
24236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 24248 - 24337
Alignment:
| Q |
194 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24248 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
24337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 14909 - 14745
Alignment:
| Q |
1 |
tgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnnt-------caaggaaaacaatccataacttgaaatgaattgattgacat |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
14909 |
tgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatacaaggaaaacaatccataacatgaaatgaattaattgacat |
14810 |
T |
|
| Q |
94 |
ggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14809 |
ggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
14745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 14733 - 14644
Alignment:
| Q |
194 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14733 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
14644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 28335593 - 28335643
Alignment:
| Q |
233 |
tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
283 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
28335593 |
tcaaattaggttagcaagactcataaaatgtgaggaaaagcaaagaataaa |
28335643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 44787548 - 44787598
Alignment:
| Q |
233 |
tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaa |
283 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
44787548 |
tcaaattaggttagcaagactcataaaatgtgaggaaaagcaaagaataaa |
44787598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 28335400 - 28335452
Alignment:
| Q |
68 |
ataacttgaaatgaattgattgacatggctcttgcatactaacaatgcccttca |
121 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
28335400 |
ataacttaaaatgaatt-attggcatggctctcgcatactaacaatgcccttca |
28335452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 44787355 - 44787407
Alignment:
| Q |
68 |
ataacttgaaatgaattgattgacatggctcttgcatactaacaatgcccttca |
121 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
44787355 |
ataacttaaaatgaatt-attggcatggctctcgcatactaacaatgcccttca |
44787407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 28335530 - 28335571
Alignment:
| Q |
197 |
atgaagttgcaaagtccaaattttgttgaagggtaatcaaat |
238 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
28335530 |
atgaagctgcaatgtcaaaattttgttgaagggtaatcaaat |
28335571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 44787485 - 44787526
Alignment:
| Q |
197 |
atgaagttgcaaagtccaaattttgttgaagggtaatcaaat |
238 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
44787485 |
atgaagctgcaatgtcaaaattttgttgaagggtaatcaaat |
44787526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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