View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17254_high_9 (Length: 232)

Name: NF17254_high_9
Description: NF17254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17254_high_9
NF17254_high_9
[»] chr2 (4 HSPs)
chr2 (21-78)||(34099089-34099146)
chr2 (21-75)||(4639992-4640046)
chr2 (21-74)||(9483989-9484042)
chr2 (21-65)||(13467444-13467488)
[»] chr7 (2 HSPs)
chr7 (21-75)||(37587445-37587499)
chr7 (21-74)||(46135166-46135219)
[»] chr4 (4 HSPs)
chr4 (21-75)||(36280285-36280339)
chr4 (21-75)||(50091305-50091359)
chr4 (25-65)||(11942586-11942626)
chr4 (21-49)||(10065308-10065336)
[»] chr3 (3 HSPs)
chr3 (21-75)||(3861149-3861203)
chr3 (21-74)||(35188985-35189038)
chr3 (21-63)||(49019534-49019576)
[»] chr6 (2 HSPs)
chr6 (21-73)||(20473489-20473541)
chr6 (21-74)||(8001351-8001404)
[»] chr1 (2 HSPs)
chr1 (21-73)||(37306379-37306431)
chr1 (21-75)||(5242609-5242663)
[»] chr5 (2 HSPs)
chr5 (21-75)||(1554790-1554844)
chr5 (21-75)||(9102343-9102397)


Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 34099089 - 34099146
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaagta 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34099089 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaagta 34099146  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 4640046 - 4639992
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4640046 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 4639992  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 9484042 - 9483989
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9484042 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaa 9483989  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 13467488 - 13467444
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13467488 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 13467444  T

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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 37587499 - 37587445
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37587499 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 37587445  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 46135166 - 46135219
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  46135166 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 46135219  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 36280285 - 36280339
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36280285 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 36280339  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 50091305 - 50091359
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 75  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || ||||||    
T  50091305 agagcacctgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 50091359  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 11942626 - 11942586
Alignment:
Q  25 cacccgtttagtaagcgggaggtcttgagttcaactctcaa 65  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  11942626 cacccgtttagtaagcgggacgtcttgagttcgactctcaa 11942586  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 10065308 - 10065336
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtct 49  Q
    |||||||||||||||||||||||||||||    
T  10065308 agagcacccgtttagtaagcgggaggtct 10065336  T

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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 3861203 - 3861149
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3861203 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 3861149  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 35188985 - 35189038
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  35188985 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 35189038  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 49019576 - 49019534
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctc 63  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  49019576 agagcacctgtttagtaagcgggaggtcttgagttcaactctc 49019534  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 20473541 - 20473489
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20473541 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 20473489  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 8001351 - 8001404
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaa 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  8001351 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 8001404  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 37306379 - 37306431
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37306379 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 37306431  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 5242609 - 5242663
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  5242609 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 5242663  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 1554790 - 1554844
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  1554790 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 1554844  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 9102343 - 9102397
Alignment:
Q  21 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  9102343 agagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 9102397  T

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