View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17254_low_12 (Length: 205)
Name: NF17254_low_12
Description: NF17254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17254_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 1850227 - 1850424
Alignment:
| Q |
1 |
ttatatagtatcattcaatgtctctcactata--tatatatcagttctaaactctcctgcccatcttccaaagcctgtatcatatttattttctattccc |
98 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1850227 |
ttatatagtatcattcaatgtctctcactatatatatatatcagttctaaactctcctgcccatcttccaaaacctgtatcatatttattttctattccc |
1850326 |
T |
|
| Q |
99 |
ttaatccttacnnnnnnnnnnctttctaaaaaggtagt----atttcatgtaaagaataatagctagcttatattagacaccatccatgtagtataat |
192 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1850327 |
ttaatccttacttttttttttctttctaaaaaggtagtgctgatttcatgtaaagaataatagctagcttatattagacaccatccatgtagtataat |
1850424 |
T |
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