View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17254_low_2 (Length: 572)
Name: NF17254_low_2
Description: NF17254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17254_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 16 - 572
Target Start/End: Complemental strand, 51115226 - 51114672
Alignment:
| Q |
16 |
aaaatagcatacatgagagacttgtgtattcaataatcaagtcaccacaaacagaatcattaagcaacaacgaaagttgatcaaaaactaaatagaaaca |
115 |
Q |
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| T |
51115226 |
aaaatagcatacatgagagacttgt--attcaataatcaagtcac-acaaacagaatcattaagcaacaacgaaagttgatcaaaaactaaatagaaaca |
51115130 |
T |
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| Q |
116 |
acaaaatatacaccaaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgatacagagaacaaccacctaatttccaaactca |
215 |
Q |
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| T |
51115129 |
acaaaatgtacacctaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgaaacagagaacaaccacctaatttccaaactca |
51115030 |
T |
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| Q |
216 |
ggatttcctttttgataactaacgtgcattcaacactatctaaggttgctactagattttgattataccttgttattgaccatattaaaactaattaaac |
315 |
Q |
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| T |
51115029 |
ggatttcctttttgataactaacgtgcattcaacactatctaaggttgctactagattttgattataccttgttattgaccatattaaaactaattaaac |
51114930 |
T |
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| Q |
316 |
actcgaatcaatgcagaaaagaatgagtagtttgtcaatagcttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgcaggc |
415 |
Q |
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| T |
51114929 |
actcgaatcaatgcagaaaagaatgagtagtcagtcaatagtttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgcaggc |
51114830 |
T |
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| Q |
416 |
gtatgcagaaagatgccaattttcgatggaactttcaacacaacgaggaattagaagaatgttgattagttttaagatagtttcacannnnnnnnaagaa |
515 |
Q |
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| T |
51114829 |
gtatgcagaaagatgccaattttcgatggaactttcaacacgacgaggaattagaagaatattgattagttttaagatagtttcacattttttttaagaa |
51114730 |
T |
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| Q |
516 |
gaagtcaaactaacacaccaaaattggcact-aagaggatcaaaccagagacttgaga |
572 |
Q |
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| T |
51114729 |
gaagtcaaactaacacaccaaaattggcactgaagaggatcaaactagagacttgaga |
51114672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 367 - 450
Target Start/End: Complemental strand, 5768905 - 5768822
Alignment:
| Q |
367 |
caatatcagacaaagcataatttcaaaataagaaacataatatgcaggcgtatgcagaaagatgccaattttcgatggaacttt |
450 |
Q |
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| T |
5768905 |
caatatcaaacaaaggataacttcaaaataagaaacataatatgtagccataagcagaaagatgccaaatttccatggaacttt |
5768822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 1119198 - 1119125
Alignment:
| Q |
125 |
acaccaaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgatacagagaacaacca |
198 |
Q |
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| T |
1119198 |
acaccaaaatcttcctgagtcgtagttttgtaagccgtacattgtaactgaaatactgaaacagagaacaacca |
1119125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 458
Target Start/End: Complemental strand, 1118800 - 1118657
Alignment:
| Q |
314 |
acactcgaatcaatgcagaaaagaatgagtagtttgtcaatagcttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgcag |
413 |
Q |
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| T |
1118800 |
acactcaaatcaaagcagagaagaaacagtacgtagtcaatatcttcaaaaac-aataccagacaaagcataatttaagaataagaaacataatatgtgg |
1118702 |
T |
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| Q |
414 |
gcgtatgcagaaagatgccaattttcgatggaactttcaacacaa |
458 |
Q |
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| T |
1118701 |
gtctcagcagaaagatgcatattttccatggaattatcaacacaa |
1118657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 29020664 - 29020718
Alignment:
| Q |
108 |
tagaaacaacaaaatatacaccaaaatcttcctgagtcatagttttgtaagccat |
162 |
Q |
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| T |
29020664 |
tagagacaacacaaaatacaccaaaatcttcctgagtcatagttctgtaaaccat |
29020718 |
T |
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