View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17254_low_3 (Length: 442)
Name: NF17254_low_3
Description: NF17254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17254_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 37634458 - 37634872
Alignment:
| Q |
10 |
gtagcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaata |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634458 |
gtagcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaata |
37634557 |
T |
|
| Q |
110 |
gtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagtttgaacaacgtgtgatccttcg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37634558 |
gtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacattttgaacaacgtgtgatccttcg |
37634657 |
T |
|
| Q |
210 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaggccagtattgcagattctgtatttgtaggtttttcccggcttca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634658 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagaccagtattgcagattctgtatttgtaggtttttcccggcttca |
37634757 |
T |
|
| Q |
310 |
ttgtgtagagtggctcatcgctaccatcgcctttagcatttttaccgtttatgataacaccggcaggtcttccaattgaacgaccactgtccaactccat |
409 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634758 |
ttgtgtagagtggctcatctctaccatcacctttagcatttttaccgtttatgataacaccggcaggtcttccaattgaacgaccactgtccaactccat |
37634857 |
T |
|
| Q |
410 |
cttaagagttttgtg |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37634858 |
cttaagagttttgtg |
37634872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 37637372 - 37637786
Alignment:
| Q |
10 |
gtagcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaata |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37637372 |
gtagcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaata |
37637471 |
T |
|
| Q |
110 |
gtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagtttgaacaacgtgtgatccttcg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37637472 |
gtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacattttgaacaacgtgtgatccttcg |
37637571 |
T |
|
| Q |
210 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaggccagtattgcagattctgtatttgtaggtttttcccggcttca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37637572 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagaccagtattgcagattctatatttgtaggtttttcccggcttca |
37637671 |
T |
|
| Q |
310 |
ttgtgtagagtggctcatcgctaccatcgcctttagcatttttaccgtttatgataacaccggcaggtcttccaattgaacgaccactgtccaactccat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37637672 |
ttgtgtagagtggctcatcgctaccatcacctttagcatttttaccgtttatgataacaccggcaggtcttccaattgaacgaccactgtccaactccat |
37637771 |
T |
|
| Q |
410 |
cttaagagttttgtg |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37637772 |
cttaagagttttgtg |
37637786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 37640286 - 37640700
Alignment:
| Q |
10 |
gtagcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaata |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640286 |
gtagcacaggtgaagcgggaccttttccgttggtgtaacgtataataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaata |
37640385 |
T |
|
| Q |
110 |
gtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagtttgaacaacgtgtgatccttcg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37640386 |
gtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacattttgaacaacgtgtgatccttcg |
37640485 |
T |
|
| Q |
210 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaggccagtattgcagattctgtatttgtaggtttttcccggcttca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640486 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagaccagtattgcagattctgtatttgtaggtttttcccggcttca |
37640585 |
T |
|
| Q |
310 |
ttgtgtagagtggctcatcgctaccatcgcctttagcatttttaccgtttatgataacaccggcaggtcttccaattgaacgaccactgtccaactccat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640586 |
ttgtgtagagtggctcatcgctaccatcacctttagcatttttaccgtttatgataacaccggcaggtcttccaattgaacgaccactgtccaactccat |
37640685 |
T |
|
| Q |
410 |
cttaagagttttgtg |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37640686 |
cttaagagttttgtg |
37640700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 37645660 - 37646074
Alignment:
| Q |
10 |
gtagcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaata |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645660 |
gtagcaaaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaactagattgtacttggtcatacgggtggaggcaatcatgtaata |
37645759 |
T |
|
| Q |
110 |
gtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagtttgaacaacgtgtgatccttcg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37645760 |
gtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacattttgaacaacgtgtgatccttcg |
37645859 |
T |
|
| Q |
210 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaggccagtattgcagattctgtatttgtaggtttttcccggcttca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37645860 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagaccagtattgcagattctatatttgtaggtttttcccggcttca |
37645959 |
T |
|
| Q |
310 |
ttgtgtagagtggctcatcgctaccatcgcctttagcatttttaccgtttatgataacaccggcaggtcttccaattgaacgaccactgtccaactccat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645960 |
ttgtgtagagtggctcatcgctaccatcacctttagcatttttaccgtttatgataacaccggcaggtcttccaattgaacgaccactgtccaactccat |
37646059 |
T |
|
| Q |
410 |
cttaagagttttgtg |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37646060 |
cttaagagttttgtg |
37646074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 37648573 - 37648987
Alignment:
| Q |
10 |
gtagcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaata |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648573 |
gtagcacaggtgaagcgggaccttttccgttggtgtaacgtataataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaata |
37648672 |
T |
|
| Q |
110 |
gtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagtttgaacaacgtgtgatccttcg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37648673 |
gtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacattttgaacaacgtgtgatccttcg |
37648772 |
T |
|
| Q |
210 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaggccagtattgcagattctgtatttgtaggtttttcccggcttca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648773 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagaccagtattgcagattctgtatttgtaggtttttcccggcttca |
37648872 |
T |
|
| Q |
310 |
ttgtgtagagtggctcatcgctaccatcgcctttagcatttttaccgtttatgataacaccggcaggtcttccaattgaacgaccactgtccaactccat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648873 |
ttgtgtagagtggctcatcgctaccatcacctttagcatttttaccgtttatgataacaccggcaggtcttccaattgaacgaccactgtccaactccat |
37648972 |
T |
|
| Q |
410 |
cttaagagttttgtg |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37648973 |
cttaagagttttgtg |
37648987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 37651485 - 37651899
Alignment:
| Q |
10 |
gtagcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37651485 |
gtagcataggtgaagcgggaccttttccgttggtgtaacgtataataccctttccaagtagattgtacttggtcatacgggtggaggcaaccatgtaata |
37651584 |
T |
|
| Q |
110 |
gtcccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagtttgaacaacgtgtgatccttcg |
209 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||| |||||||||| ||||| ||||| |
|
|
| T |
37651585 |
gtcctttggctctttatcggcggtcacgaggacagtgtagcattgcccaacatgaacgtcgagagagtcatagacattttgaacaacatgtgagccttca |
37651684 |
T |
|
| Q |
210 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaaggccagtattgcagattctgtatttgtaggtttttcccggcttca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37651685 |
gtttcaaccaacttcattccatgtccttggaacctgaagttaagggtgtccttaagaccagtattgcagattctatatttgtaggtttttcccggcttca |
37651784 |
T |
|
| Q |
310 |
ttgtgtagagtggctcatcgctaccatcgcctttagcatttttaccgtttatgataacaccggcaggtcttccaattgaacgaccactgtccaactccat |
409 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37651785 |
ttgtgtatagtggctcatcgctaccatcacctttagcatttttaccgtttatgataacaccagcaggtcttccaattgaacgaccactgtccaactccat |
37651884 |
T |
|
| Q |
410 |
cttaagagttttgtg |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37651885 |
cttaagagttttgtg |
37651899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 32381772 - 32381849
Alignment:
| Q |
245 |
gaagttaagggtgtccttaaggccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtgg |
322 |
Q |
| |
|
||||||||||| || ||||| ||| |||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
32381772 |
gaagttaagggagtttttaagaccaacattgcagattctgtatttgtaggtttttcctggcttcattgtgaagagtgg |
32381849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 326
Target Start/End: Original strand, 32387929 - 32388123
Alignment:
| Q |
132 |
gtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagtttgaacaacgtgtgatccttcggtttcaaccaacttcattccat |
231 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||||||||| || |||||||| ||||||| ||| || ||||| |||| || | ||||||| | |
|
|
| T |
32387929 |
gtcacgaggacagagaagcattgtcctacgtgaacgtcaagggaatcataaacgttttgaacggtgtgggaaccttccatttcgacgagcttcattgggt |
32388028 |
T |
|
| Q |
232 |
gtccttggaacctgaagttaagggtgtccttaaggccagtattgcagattctgtatttgtaggtttttcccggcttcattgtgtagagtggctca |
326 |
Q |
| |
|
| |||||| ||||||||||| | ||||| || ||| ||||||| |||||| |||||||| ||||| |||| |||| |||||||||||||| |
|
|
| T |
32388029 |
gatcttggattctgaagttaagagaatccttgagaccaacgttgcagagtctgtacttgtaggtctttcctggctccattttgtagagtggctca |
32388123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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