View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17254_low_4 (Length: 394)

Name: NF17254_low_4
Description: NF17254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17254_low_4
NF17254_low_4
[»] chr3 (26 HSPs)
chr3 (19-378)||(37236911-37237270)
chr3 (158-326)||(54996715-54996881)
chr3 (159-327)||(25179933-25180104)
chr3 (229-327)||(49815461-49815559)
chr3 (228-319)||(14898023-14898115)
chr3 (251-332)||(25655100-25655182)
chr3 (251-319)||(41110449-41110518)
chr3 (257-327)||(651770-651841)
chr3 (278-328)||(18086018-18086068)
chr3 (251-332)||(28582637-28582719)
chr3 (243-324)||(30200211-30200293)
chr3 (251-315)||(46556194-46556259)
chr3 (253-332)||(21773816-21773896)
chr3 (272-332)||(34641140-34641200)
chr3 (236-319)||(46204933-46205017)
chr3 (271-318)||(40463919-40463966)
chr3 (253-292)||(47989095-47989134)
chr3 (253-292)||(47998382-47998421)
chr3 (253-292)||(48007669-48007708)
chr3 (279-333)||(9312504-9312558)
chr3 (228-309)||(18654705-18654787)
chr3 (273-319)||(24560368-24560414)
chr3 (273-327)||(30200127-30200181)
chr3 (273-327)||(37102188-37102242)
chr3 (228-332)||(24560251-24560356)
chr3 (229-309)||(45663250-45663330)
[»] chr7 (28 HSPs)
chr7 (175-327)||(19261891-19262043)
chr7 (228-332)||(41497062-41497167)
chr7 (273-332)||(30592287-30592346)
chr7 (234-332)||(39855976-39856075)
chr7 (285-331)||(23116294-23116340)
chr7 (228-325)||(33655213-33655311)
chr7 (279-332)||(4833565-4833618)
chr7 (251-319)||(34235135-34235205)
chr7 (234-319)||(37417744-37417830)
chr7 (229-282)||(18063667-18063720)
chr7 (273-326)||(33655148-33655201)
chr7 (229-332)||(33519082-33519186)
chr7 (257-319)||(13771080-13771143)
chr7 (229-327)||(17852910-17853009)
chr7 (273-332)||(18231737-18231796)
chr7 (222-289)||(32392336-32392403)
chr7 (251-332)||(34228446-34228529)
chr7 (279-326)||(40196572-40196619)
chr7 (253-327)||(43230275-43230350)
chr7 (222-320)||(2655699-2655797)
chr7 (252-315)||(41008233-41008298)
chr7 (298-327)||(17853046-17853075)
chr7 (251-319)||(40196660-40196729)
chr7 (235-275)||(20393693-20393733)
chr7 (257-293)||(21044941-21044977)
chr7 (228-276)||(22163214-22163262)
chr7 (228-276)||(22221922-22221970)
chr7 (279-319)||(34235054-34235094)
[»] chr4 (33 HSPs)
chr4 (225-325)||(23813142-23813243)
chr4 (228-332)||(27735779-27735884)
chr4 (146-327)||(11842348-11842530)
chr4 (228-332)||(46007806-46007911)
chr4 (229-333)||(55510203-55510308)
chr4 (235-293)||(38702699-38702757)
chr4 (223-327)||(18516571-18516675)
chr4 (228-332)||(37711177-37711282)
chr4 (251-326)||(47433836-47433913)
chr4 (251-327)||(54935107-54935184)
chr4 (231-291)||(5307083-5307143)
chr4 (228-315)||(26166988-26167076)
chr4 (228-314)||(35248738-35248825)
chr4 (254-333)||(49936192-49936271)
chr4 (278-332)||(21694924-21694978)
chr4 (228-305)||(36151637-36151715)
chr4 (228-315)||(1968464-1968552)
chr4 (226-319)||(17938210-17938305)
chr4 (255-327)||(56427032-56427104)
chr4 (273-324)||(31348363-31348414)
chr4 (254-332)||(31348452-31348531)
chr4 (229-331)||(43961445-43961548)
chr4 (273-332)||(45742041-45742100)
chr4 (228-309)||(5730935-5731017)
chr4 (278-315)||(27735901-27735938)
chr4 (251-319)||(44784039-44784108)
chr4 (234-319)||(45132612-45132692)
chr4 (251-288)||(54494717-54494754)
chr4 (251-333)||(27775611-27775697)
chr4 (225-324)||(41227525-41227622)
chr4 (228-319)||(45741937-45742029)
chr4 (229-332)||(47694383-47694487)
chr4 (222-282)||(56135834-56135894)
[»] chr8 (31 HSPs)
chr8 (229-327)||(38198155-38198253)
chr8 (171-332)||(30581856-30582023)
chr8 (235-332)||(31543184-31543282)
chr8 (228-332)||(11575511-11575616)
chr8 (226-325)||(41103609-41103709)
chr8 (251-327)||(16652988-16653065)
chr8 (251-331)||(42650464-42650545)
chr8 (234-322)||(34552606-34552694)
chr8 (254-333)||(2481912-2481989)
chr8 (229-327)||(12022249-12022348)
chr8 (226-327)||(24243150-24243252)
chr8 (234-315)||(30664412-30664494)
chr8 (251-328)||(37032417-37032495)
chr8 (228-319)||(3726960-3727052)
chr8 (251-325)||(1281184-1281259)
chr8 (229-316)||(6192392-6192476)
chr8 (251-333)||(7503082-7503165)
chr8 (273-332)||(31543106-31543165)
chr8 (228-310)||(37923183-37923266)
chr8 (228-317)||(1026954-1027043)
chr8 (228-309)||(31738480-31738562)
chr8 (251-315)||(28083793-28083858)
chr8 (278-327)||(34196465-34196513)
chr8 (251-315)||(40990312-40990377)
chr8 (228-319)||(7979187-7979279)
chr8 (229-332)||(8815247-8815351)
chr8 (252-319)||(10028157-10028225)
chr8 (273-325)||(16653100-16653152)
chr8 (284-324)||(20472734-20472774)
chr8 (273-317)||(30479766-30479810)
chr8 (234-282)||(36042497-36042545)
[»] chr1 (21 HSPs)
chr1 (229-319)||(42742416-42742503)
chr1 (229-327)||(27739091-27739189)
chr1 (228-332)||(40095038-40095144)
chr1 (228-327)||(10391911-10392011)
chr1 (251-332)||(2859060-2859142)
chr1 (251-327)||(8529838-8529915)
chr1 (278-327)||(41676437-41676486)
chr1 (251-326)||(49832587-49832663)
chr1 (251-332)||(32951446-32951528)
chr1 (251-332)||(51597702-51597784)
chr1 (228-332)||(38509999-38510104)
chr1 (279-327)||(40094972-40095020)
chr1 (228-319)||(45585790-45585882)
chr1 (281-332)||(2858966-2859017)
chr1 (248-319)||(47552883-47552953)
chr1 (255-324)||(12234052-12234122)
chr1 (251-332)||(30010366-30010448)
chr1 (279-332)||(41498561-41498614)
chr1 (229-282)||(51582066-51582119)
chr1 (228-276)||(50744386-50744434)
chr1 (254-326)||(51303707-51303779)
[»] chr6 (19 HSPs)
chr6 (251-325)||(16509322-16509396)
chr6 (234-351)||(17842399-17842515)
chr6 (271-332)||(10818365-10818426)
chr6 (251-327)||(12811108-12811185)
chr6 (222-275)||(32926737-32926790)
chr6 (252-319)||(6034201-6034269)
chr6 (255-319)||(2893677-2893742)
chr6 (228-317)||(4097617-4097708)
chr6 (252-315)||(33041521-33041585)
chr6 (235-308)||(13583777-13583851)
chr6 (226-319)||(16738099-16738193)
chr6 (273-319)||(19278081-19278127)
chr6 (251-332)||(31849144-31849226)
chr6 (273-327)||(31849261-31849315)
chr6 (278-315)||(12811034-12811071)
chr6 (225-309)||(14548708-14548793)
chr6 (255-332)||(29019965-29020042)
chr6 (279-319)||(2900067-2900107)
chr6 (279-327)||(21606883-21606931)
[»] chr2 (31 HSPs)
chr2 (228-332)||(8426976-8427081)
chr2 (249-316)||(44966634-44966700)
chr2 (222-320)||(18811375-18811473)
chr2 (234-329)||(886955-887049)
chr2 (261-327)||(14196808-14196874)
chr2 (251-332)||(36347669-36347751)
chr2 (269-327)||(14187113-14187171)
chr2 (237-327)||(21662323-21662413)
chr2 (228-318)||(12541813-12541905)
chr2 (228-332)||(15224799-15224904)
chr2 (232-332)||(41778807-41778908)
chr2 (272-332)||(887260-887320)
chr2 (228-327)||(39821708-39821808)
chr2 (278-332)||(40022529-40022583)
chr2 (234-319)||(31086553-31086638)
chr2 (226-332)||(31928147-31928259)
chr2 (158-202)||(14196730-14196774)
chr2 (234-309)||(19566932-19567008)
chr2 (273-332)||(8426913-8426972)
chr2 (273-327)||(1583228-1583282)
chr2 (273-319)||(15224741-15224787)
chr2 (228-315)||(37739996-37740085)
chr2 (273-318)||(887165-887210)
chr2 (278-323)||(9313143-9313188)
chr2 (278-315)||(9427142-9427179)
chr2 (229-282)||(21502118-21502171)
chr2 (251-327)||(23748134-23748211)
chr2 (229-333)||(31795875-31795980)
chr2 (251-291)||(40022445-40022486)
chr2 (278-326)||(19566860-19566908)
chr2 (228-319)||(39732834-39732925)
[»] chr5 (26 HSPs)
chr5 (249-333)||(20409693-20409777)
chr5 (251-332)||(10650463-10650545)
chr5 (228-319)||(10072752-10072844)
chr5 (273-332)||(1657964-1658023)
chr5 (228-319)||(4373671-4373763)
chr5 (228-319)||(37551455-37551546)
chr5 (228-319)||(37654285-37654376)
chr5 (251-332)||(7544170-7544252)
chr5 (251-332)||(26414927-26415009)
chr5 (278-327)||(2550391-2550440)
chr5 (228-332)||(13634745-13634850)
chr5 (254-326)||(14874079-14874149)
chr5 (284-333)||(40305698-40305747)
chr5 (228-325)||(28279581-28279680)
chr5 (279-319)||(36392197-36392237)
chr5 (251-333)||(13298299-13298382)
chr5 (273-332)||(13634862-13634921)
chr5 (298-333)||(20147051-20147086)
chr5 (273-319)||(20513492-20513538)
chr5 (228-314)||(36392255-36392341)
chr5 (226-319)||(2556120-2556213)
chr5 (254-326)||(14684613-14684688)
chr5 (228-332)||(16938513-16938618)
chr5 (278-327)||(29002245-29002294)
chr5 (228-315)||(14681520-14681608)
chr5 (279-319)||(26415050-26415090)
[»] scaffold0067 (2 HSPs)
scaffold0067 (253-332)||(39320-39400)
scaffold0067 (273-327)||(39226-39280)
[»] scaffold0096 (1 HSPs)
scaffold0096 (251-332)||(6618-6700)
[»] scaffold0171 (1 HSPs)
scaffold0171 (251-319)||(15997-16066)
[»] scaffold0198 (1 HSPs)
scaffold0198 (277-332)||(3181-3236)
[»] scaffold0262 (1 HSPs)
scaffold0262 (251-327)||(16424-16501)


Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 37237270 - 37236911
Alignment:
Q  19 ctgccacaagtatattgacatccggcaattctaatggaggtagtgggtcgacaaattggagaatgttatatccggagacattaccactcactttaataat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37237270 ctgccacaagtatattgacatccggcaattctaatggaggtagtgggtcgacaaattggagaatgttatatccggagacattaccactcactttaataat 37237171  T
Q  119 tcaaatgatcaactgaaaaatgttttcactaaggctgtgtttgggaagaggtttttggagggctaagtctatatcttgaaatatgtttgacattttnnnn 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        
T  37237170 tcaaatgatcaactgaaaaatgttttcactaaggctgtgtttgggaagaggtttttggagggctaagtctatatcttgaaatatgtttgatattttaaaa 37237071  T
Q  219 nnnttgaaataacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagta 318  Q
       ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37237070 aaattgaaataacatgataaatgatcatttagtacttcaatcacacttaatttattttcaaaaacattttgtagcgtctgtaatttaaaaatgaaaagta 37236971  T
Q  319 agccctcccttccccattcaaacataccctaaatttttgggaggtcttccaacaagttat 378  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37236970 agccctcccttccccattcaaacatatcctaaatttttgggaggtcttccaacaagttat 37236911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 158 - 326
Target Start/End: Original strand, 54996715 - 54996881
Alignment:
Q  158 tttgggaagaggtttttggagggctaagtctatatcttgaaatatgtttgacattttnnnnnnnttgaaataacacgataaatggtcatttagtacttca 257  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||| ||||| |||||       |||||| |||| |||||||| |||| || |||||||    
T  54996715 tttgggaggaggtttttggaaggctaagtctatattttgaaatatatttgatattttaaaaaaattgaaagaacatgataaatgatcatataatacttca 54996814  T
Q  258 atcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||||||| ||| ||||| | ||||||||||||   ||||||||||||||| ||||||||| ||||||    
T  54996815 atcacacttcattcattttaataaacattttata--atctgtaatttaaaaaagaaaagtaacccctcc 54996881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 159 - 327
Target Start/End: Complemental strand, 25180104 - 25179933
Alignment:
Q  159 ttgggaagaggtttttggagggctaagtctatatcttgaaatatgtttgacattttnnnnnnnttgaa--ataacacgataaatggtcatttagtacttc 256  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||       || ||  | |||| | ||| || |||| || || |||    
T  25180104 ttgggaggagggttttggagggctaagtctatatcttgaaatatatttgatatttttcaaaaattaaataacaacatggtaagtgatcatataatatttc 25180005  T
Q  257 aatcacacttaatttattttcaaa-aacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||||||||||| |||||| |||| |||||||||||| |||  |||||||||||||||||||||| ||||||    
T  25180004 aatcacacttaaattatttccaaagaacattttatagtgtccataatttaaaaatgaaaagtaagtcctccc 25179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 49815559 - 49815461
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| ||| |||| |||| || |||||||||||| ||||||||||||| |||||||||||||||    ||||||||||||| |||||||||||||||||    
T  49815559 aacaagatcaatgatcatataatacttcaatcacgcttaatttatttttaaaaacattttatagtacttgtaatttaaaaaagaaaagtaagccctccc 49815461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 14898115 - 14898023
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||||||||||| | |||| || ||||||||||||||||||||||||||  |||||||| | |||  |||||||||||||||| |||||||||    
T  14898115 taacacgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgtcatatagtctgtaatttaaaaaagaaaagtaa 14898023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 25655100 - 25655182
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||||||||||||||||||  |||||||| |||||  ||| |||||||||||||||||  ||| ||||||| ||||    
T  25655100 tacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaatgaaagttaaaccctcccctccc 25655182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 41110449 - 41110518
Alignment:
Q  251 tacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||||||||||||||||||||||| |||||||| ||||   ||| |||||||||||| |||||||||    
T  41110449 tacttcaatcacacttaatttattttcgaaaaacatgttatctagtccgtaatttaaaaacgaaaagtaa 41110518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 651841 - 651770
Alignment:
Q  257 aatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||||||||||||||||||||  |||||||| |||||  |||| ||||||||||| ||||||||| |||||||    
T  651841 aatcacacttaatttattttagaaaaacatgttatatagtctataatttaaaaaagaaaagtaaaccctccc 651770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 18086068 - 18086018
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccct 328  Q
    ||||||||||||||  |||||||||||||||| ||||||||||| ||||||    
T  18086068 aaaaacattttataatgtctgtaatttaaaaaagaaaagtaagctctccct 18086018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 28582637 - 28582719
Alignment:
Q  251 tacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||||||| ||||||| |||||| ||  |||||||| ||||| |||| |||||||||||| ||||||||| ||||||| ||||    
T  28582637 tacttcaaccacacttgatttatcttagaaaaacatgttatatcgtccgtaatttaaaaaagaaaagtaaaccctcccctccc 28582719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 30200211 - 30200293
Alignment:
Q  243 tcatttagtacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccct 324  Q
    |||| |||||||| |||||||||| |||||||||  |||||||| |||||  ||| |||||||||||| ||||||||| ||||    
T  30200211 tcatatagtactttaatcacacttgatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaaccct 30200293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 46556259 - 46556194
Alignment:
Q  251 tacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    ||||||||||||||| ||||||||||  |||||||| |||||  |||||||||||||||| |||||    
T  46556259 tacttcaatcacactcaatttattttggaaaaacatattatatagtctgtaatttaaaaaagaaaa 46556194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 21773896 - 21773816
Alignment:
Q  253 cttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||||||||||||||||  |||||||| |||||  ||| |||||||| ||| ||||||||  |||| |||||||    
T  21773896 cttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttagaaaagaaaagtatacccttccttccc 21773816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 34641140 - 34641200
Alignment:
Q  272 attttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||||| ||| |||||||||  ||| |||||||||||| ||||||||||||||||| ||||    
T  34641140 attttctaaatcattttataatgtccgtaatttaaaaaagaaaagtaagccctcccctccc 34641200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 319
Target Start/End: Complemental strand, 46205017 - 46204933
Alignment:
Q  236 taaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||||| |||| || ||||||||||||||||||||||||||  |||||||| |||||  ||   ||||||||||| |||||||||    
T  46205017 taaatgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagttcataatttaaaaaagaaaagtaa 46204933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 40463966 - 40463919
Alignment:
Q  271 tattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagta 318  Q
    |||||| ||||||| ||||||| ||| |||||||||||||||||||||    
T  40463966 tattttaaaaaacaatttatagtgtccgtaatttaaaaatgaaaagta 40463919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 47989095 - 47989134
Alignment:
Q  253 cttcaatcacacttaatttattttcaaaaacattttatag 292  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  47989095 cttcaatcacatttaatttattttaaaaaacattttatag 47989134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 47998382 - 47998421
Alignment:
Q  253 cttcaatcacacttaatttattttcaaaaacattttatag 292  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  47998382 cttcaatcacatttaatttattttaaaaaacattttatag 47998421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 48007669 - 48007708
Alignment:
Q  253 cttcaatcacacttaatttattttcaaaaacattttatag 292  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  48007669 cttcaatcacatttaatttattttaaaaaacattttatag 48007708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 9312558 - 9312504
Alignment:
Q  279 aaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttcccc 333  Q
    |||| |||| |||| ||||||||||||||||||||||  || |||||||||||||    
T  9312558 aaaatatttcatagtgtctgtaatttaaaaatgaaaatcaaaccctcccttcccc 9312504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 18654705 - 18654787
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaa 309  Q
    ||||| |||||||| |||| || ||||||||| ||||||||||||||||  | |||||| |||||  ||| ||||||||||||    
T  18654705 taacatgataaatgatcatataatacttcaattacacttaatttattttagagaaacatgttatatagtccgtaatttaaaaa 18654787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 24560368 - 24560414
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||| |||||||||| |||| ||| ||||||||||||||||||||||    
T  24560368 ttttaaaaaacatttcatagtgtcggtaatttaaaaatgaaaagtaa 24560414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 30200181 - 30200127
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||||||| |||| ||| |||||||||||||||||| ||| |||||||    
T  30200181 ttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaactaaaccctccc 30200127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 37102242 - 37102188
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||||||| |||| ||| |||||||||||||||||| ||| |||||||    
T  37102242 ttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaactaaaccctccc 37102188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 24560356 - 24560251
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||| | |||| || ||||||||||||| ||||||||||||  |||||||| ||| |  ||| |||||||||||| |||||  || ||||||    
T  24560356 taacatgataaacgatcatataatacttcaatcacatttaatttattttagaaaaacatgttacatagtccgtaatttaaaaaagaaaaacaaaccctcc 24560257  T
Q  327 cttccc 332  Q
    | ||||    
T  24560256 cctccc 24560251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 45663250 - 45663330
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaa 309  Q
    |||| |||||||| || | || |||||||||||||  ||||||||||| ||||| ||||||||  ||| |||||| |||||    
T  45663250 aacatgataaatgatcttataatacttcaatcacatataatttattttaaaaaatattttatattgtccgtaattgaaaaa 45663330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 175 - 327
Target Start/End: Original strand, 19261891 - 19262043
Alignment:
Q  175 ggagggctaagtctatatcttgaaatatgtttgacattttnnnnnnnttgaaataacacgataaatggtcatttagtacttcaatcacacttaatttatt 274  Q
    ||||||| |||||||||| || |||||| ||||| |||||       |||||| |||| |||||||| |||| |||||||||||||||| ||||||||||    
T  19261891 ggagggcaaagtctatattttcaaatatatttgatatttttaaaaaattgaaagaacatgataaatgatcatatagtacttcaatcacaattaatttatt 19261990  T
Q  275 ttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||  ||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  19261991 tttcaaaacattttaaagagtctgtaatttaaaattgaaaagtaagccctccc 19262043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 41497062 - 41497167
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||||| |||| || | ||||||||||||||||||||||||  |||||||| |||||  ||| |||||||||||| ||||||||| ||||||    
T  41497062 taacatgataaatgatcatataattcttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaaccctcc 41497161  T
Q  327 cttccc 332  Q
    | ||||    
T  41497162 cctccc 41497167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 30592346 - 30592287
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||| |||| |||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  30592346 ttttaaaaatcattttatagtgtctgtaatttaaaaaagaaaagtaagccctcccttccc 30592287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 332
Target Start/End: Original strand, 39855976 - 39856075
Alignment:
Q  234 gataaatggtcatttagtacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||||||| |||| || ||||| | ||||||||||||||||||  |||||||| |||||  ||| |||||||||||| ||||||||| ||||||| ||||    
T  39855976 gataaatgatcatataatacttaagtcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaaccctcccctccc 39856075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 23116340 - 23116294
Alignment:
Q  285 ttttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttcc 331  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||    
T  23116340 ttttatagtgtctgtaatttaaaaaagaaaagtaagccctcccttcc 23116294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 33655213 - 33655311
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctc 325  Q
    ||||| |||||||| |||| || ||||||||||||||||||||||||||  |||||||| |||||  | |  ||||||||||| ||||||||| |||||    
T  33655213 taacatgataaatgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagcccataatttaaaaaagaaaagtaaaccctc 33655311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 4833618 - 4833565
Alignment:
Q  279 aaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||||||| ||||    
T  4833618 aaaacatttcatagtgtctgtaatttaaaaatgaaaagtaaaccctcccctccc 4833565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 34235135 - 34235205
Alignment:
Q  251 tacttcaatcacacttaatttatttt--caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||||||||||||||||||||||   |||||||| |||||   || ||||||||||||||||||||||    
T  34235135 tacttcaatcacacttaatttattttagaaaaaacatgttatataatccgtaatttaaaaatgaaaagtaa 34235205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 37417744 - 37417830
Alignment:
Q  234 gataaatggtcatttagtacttcaatcacacttaattta-ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||||| | |||| || |||||||||||||||||| ||| |||| |||||||| |||||  ||| || |||||||||||||||||||    
T  37417744 gataaacgatcatataatacttcaatcacacttaacttaattttgaaaaacatgttatatagtccgttatttaaaaatgaaaagtaa 37417830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 18063667 - 18063720
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaa 282  Q
    |||| |||||||| |||| || |||||||||||||||||||||||||| |||||    
T  18063667 aacatgataaatgatcatataatacttcaatcacacttaatttattttaaaaaa 18063720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 33655201 - 33655148
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    |||| |||||||||| |||| ||| |||||||||||||||||||||| ||||||    
T  33655201 ttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctcc 33655148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 33519186 - 33519082
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaa-cattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||||| |||| || ||||||||  |||||||||||||||  ||||| |||||||||  ||  ||||||||||||  |||||| |||||||||    
T  33519186 aacatgataaatgatcatataatacttcaaaaacacttaatttatttcaaaaaaacattttatattgttcgtaatttaaaaaataaaagtgagccctccc 33519087  T
Q  328 ttccc 332  Q
     ||||    
T  33519086 ctccc 33519082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 13771080 - 13771143
Alignment:
Q  257 aatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||||||||||||||||  |||||||| |||||  ||| |||||||||||| |||||||||    
T  13771080 aatcacacttaatttattttaaaaaaacatgttatatagtccgtaatttaaaaacgaaaagtaa 13771143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 17853009 - 17852910
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||| | |||| || ||| ||||||||||||||||||||||  |||||||| ||||    || |||||||||||| ||||||||| |||||||    
T  17853009 aacatgataaacgatcatataatacctcaatcacacttaatttattttagaaaaacatgttatttaatccgtaatttaaaaaagaaaagtaatccctccc 17852910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 18231737 - 18231796
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||| |||||||||| |||| || |||||||||||||||||||||||  |||||| ||||    
T  18231737 ttttaaaaaacatttcatagtgtttgtaatttaaaaatgaaaagtaaatcctcccctccc 18231796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 32392336 - 32392403
Alignment:
Q  222 ttgaaataacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacatttta 289  Q
    ||||||||| |||||  |||||||| || ||||||||  |||||||||| |||| |||||||||||||    
T  32392336 ttgaaataaaacgatggatggtcatataatacttcaacgacacttaattcatttacaaaaacatttta 32392403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 34228446 - 34228529
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcg-tctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||||||||||||||||||  |||||||| |||||  | || ||||||| ||||||||||||||  |||||| ||||    
T  34228446 tacttcaatcacacttaatttattttagaaaaacatgttatatagttccgtaattttaaaatgaaaagtaaatcctcccctccc 34228529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 40196619 - 40196572
Alignment:
Q  279 aaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    |||||||||||||| ||| |||||| ||||||||||||||| ||||||    
T  40196619 aaaacattttatagtgtccgtaattcaaaaatgaaaagtaaaccctcc 40196572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 43230350 - 43230275
Alignment:
Q  253 cttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||||||| |||||||||||||||  |||||||| |||||   || |||||||||||| ||||||||| |||||||    
T  43230350 cttcaatcgcacttaatttattttagaaaaacatgttatataatccgtaatttaaaaaagaaaagtaaaccctccc 43230275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 320
Target Start/End: Original strand, 2655699 - 2655797
Alignment:
Q  222 ttgaaataacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaag 320  Q
    ||||||||||| |||||||| | |  |||| | | ||| |||||||| ||||||  ||||| |||||||||  | |||||||||||||||||| |||||    
T  2655699 ttgaaataacatgataaatgatgaaatagttcattaataacacttaaattatttaaaaaaatattttatagtatttgtaatttaaaaatgaaacgtaag 2655797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 41008298 - 41008233
Alignment:
Q  252 acttcaatcacacttaatttatttt--caaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    |||||||||||||||||||||||||   |||||||| |||||  ||| |||||||||||| |||||    
T  41008298 acttcaatcacacttaatttattttaaaaaaaacatgttatatagtccgtaatttaaaaaagaaaa 41008233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 17853046 - 17853075
Alignment:
Q  298 gtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||||||||||||||||||||||||||||||    
T  17853046 gtaatttaaaaatgaaaagtaagccctccc 17853075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 40196660 - 40196729
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||||||||||||||||||||||  |||||||| |||||   || ||||||||||||  ||||||||    
T  40196660 tacttcaatcacacttaatttattttagaaaaacatgttatatattccgtaatttaaaaacaaaaagtaa 40196729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 20393733 - 20393693
Alignment:
Q  235 ataaatggtcatttagtacttcaatcacacttaatttattt 275  Q
    ||||||| |||| || |||||||||||||||||||||||||    
T  20393733 ataaatgatcatataatacttcaatcacacttaatttattt 20393693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 21044941 - 21044977
Alignment:
Q  257 aatcacacttaatttattttcaaaaacattttatagc 293  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  21044941 aatcacacttaatttatttttaaaaacaatttatagc 21044977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 22163214 - 22163262
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt 276  Q
    ||||| |||||| | |||| || ||||||||||||||||||||||||||    
T  22163214 taacatgataaacgatcatataatacttcaatcacacttaatttatttt 22163262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 22221922 - 22221970
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt 276  Q
    ||||| |||||| | |||| || ||||||||||||||||||||||||||    
T  22221922 taacatgataaacgatcatataatacttcaatcacacttaatttatttt 22221970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 34235094 - 34235054
Alignment:
Q  279 aaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||||| |||| ||| ||||||||||||||||||||||    
T  34235094 aaaacatttcatagtgtccgtaatttaaaaatgaaaagtaa 34235054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 23813243 - 23813142
Alignment:
Q  225 aaataacacgataaatggtcatttagtacttcaatcacacttaattta-ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccc 323  Q
    ||||||||||||||||| |||| |||||||||||| |||||| ||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||| ||    
T  23813243 aaataacacgataaatgatcatatagtacttcaataacactttatttaattttcaaaaacattttatagtgtccgtaatttaacaatgaaaagtaagtcc 23813144  T
Q  324 tc 325  Q
    ||    
T  23813143 tc 23813142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 27735884 - 27735779
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||||| |||| || ||||||||||||||||||||||||||  |||||||| |||||  ||| |||||||||||||||||| ||| |||||     
T  27735884 taacatgataaatgatcatataatacttcaatcacacttaatttattttaaaaaaacatgttatatagtccgtaatttaaaaatgaaaattaaaccctct 27735785  T
Q  327 cttccc 332  Q
    ||||||    
T  27735784 cttccc 27735779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 327
Target Start/End: Complemental strand, 11842530 - 11842348
Alignment:
Q  146 actaaggctgtgtttgggaagaggtttttggagggctaagtctatatcttgaaatatgtttgacattttnnnnnnnttgaaataacac---gataaatgg 242  Q
    ||||||| | ||||||||| | || |||||||||| ||||||||||| |||||||||  |||| |||||       ||||||| |||    ||||||||     
T  11842530 actaaggttctgtttgggagg-ggattttggagggttaagtctatattttgaaatattattgatatttttaaaaaattgaaattacaatatgataaatga 11842432  T
Q  243 tcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| || ||||||||||| |||||||| ||||  ||||| ||||||||| ||||||||||| |||| |||||||||| ||||||    
T  11842431 tcatataatacttcaatcagacttaattcattta-aaaaatattttatagtgtctgtaatttgaaaaagaaaagtaagtcctccc 11842348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 46007806 - 46007911
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||||| |||| || |||||||||| ||||||||||||||| ||||||||  |||||  ||||| |||||||||| ||||||||| ||||||    
T  46007806 taacatgataaatgatcatataatacttcaatctcacttaatttattttacaaaaacaagttatatagtctgcaatttaaaaaagaaaagtaaaccctcc 46007905  T
Q  327 cttccc 332  Q
    | ||||    
T  46007906 cctccc 46007911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 333
Target Start/End: Complemental strand, 55510308 - 55510203
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaa-cattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| ||| |||| |||| || ||||||| |||||||||||||||||| ||||| ||||||| |  |||| ||| |||||||||||||||||| ||||||    
T  55510308 aacatgatgaatgatcatataatacttcagtcacacttaatttattttaaaaaaacattttacattgtctttaaattaaaaatgaaaagtaagtcctccc 55510209  T
Q  328 ttcccc 333  Q
     |||||    
T  55510208 ctcccc 55510203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 38702757 - 38702699
Alignment:
Q  235 ataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagc 293  Q
    ||||||| |||| ||| | |||||||||||||||||||||||||||| |||||||||||    
T  38702757 ataaatgatcatatagcatttcaatcacacttaatttattttcaaaagcattttatagc 38702699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 18516571 - 18516675
Alignment:
Q  223 tgaaataacacgataaatggtcatttagtacttcaatcacacttaattta-ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagc 321  Q
    ||||| |||| |||||||| |||  || | |||||||||||||||||| | |||| ||||||||||||||| ||   ||||||||||| |||||||||||    
T  18516571 tgaaagaacatgataaatgatcacataatgcttcaatcacacttaattcattttttaaaaacattttatagtgttcataatttaaaaa-gaaaagtaagc 18516669  T
Q  322 cctccc 327  Q
    ||||||    
T  18516670 cctccc 18516675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 37711282 - 37711177
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||||| |||| || ||||||||||||||||||||||||||  | |||||| |||||  ||| |||||||||||| |||||  || ||||||    
T  37711282 taacatgataaatgatcatataatacttcaatcacacttaatttattttagagaaacatgttatatagtccgtaatttaaaaaagaaaaacaaaccctcc 37711183  T
Q  327 cttccc 332  Q
    | ||||    
T  37711182 cctccc 37711177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 47433836 - 47433913
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacatttta-tagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||||||||||||||||||||||||  |||||||| ||| ||  |||||||||||||||| ||||||||| ||||||    
T  47433836 tacttcaatcacacttaatttattttaaaaaaacatgttattatagtctgtaatttaaaaaagaaaagtaaaccctcc 47433913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 54935184 - 54935107
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||||||||||||||||||||||||||  |||||||| |||||  ||  |||||||||||| ||||||||| |||||||    
T  54935184 tacttcaatcacacttaatttattttagaaaaacatgttatatagttcgtaatttaaaaaagaaaagtaaaccctccc 54935107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 5307143 - 5307083
Alignment:
Q  231 cacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttata 291  Q
    ||||||||||| ||||  | |||| ||||||||||| ||||||||||||||||||||||||    
T  5307143 cacgataaatgatcataaaatactgcaatcacacttgatttattttcaaaaacattttata 5307083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 315
Target Start/End: Complemental strand, 26167076 - 26166988
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    ||||| |||||| | |||| || ||||||||||||||||||||||||||  | |||||| |||||  |||||||||||||||| |||||    
T  26167076 taacatgataaacgatcatataatacttcaatcacacttaatttattttagagaaacatgttatatagtctgtaatttaaaaaagaaaa 26166988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 314
Target Start/End: Complemental strand, 35248825 - 35248738
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaa 314  Q
    ||||| |||||||  |||| || ||||||||||||||||||||||||||  |||||||| |||||  ||| |||||||||||| ||||    
T  35248825 taacatgataaataatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaa 35248738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 49936271 - 49936192
Alignment:
Q  254 ttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttcccc 333  Q
    ||||||||||||||||| ||||  ||||||||  ||||| ||| |||||||||||| |||||| |||| ||||| |||||    
T  49936271 ttcaatcacacttaattgatttaaaaaaacatcatatagtgtccgtaatttaaaaaagaaaagcaagcactcccctcccc 49936192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 21694978 - 21694924
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||| |||||||||| ||| |||||||||||| ||||||||||||||||| ||||    
T  21694978 aaaaccattttatagtgtccgtaatttaaaaaagaaaagtaagccctcccgtccc 21694924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 36151715 - 36151637
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaattta 305  Q
    ||||| |||||| | |||| || ||||||||||||||||||||||||||  |||||||| |||||  ||||||||||||    
T  36151715 taacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtctgtaattta 36151637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 315
Target Start/End: Original strand, 1968464 - 1968552
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    ||||| |||||| | |||| || |||||||||||||| | |||||||||  |||||||| |||||  ||| ||||||||||||||||||    
T  1968464 taacatgataaacgatcatataatacttcaatcacacctgatttattttagaaaaacatattatatagtccgtaatttaaaaatgaaaa 1968552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 319
Target Start/End: Original strand, 17938210 - 17938305
Alignment:
Q  226 aataacacgataaatggtcatttagtacttcaatcacacttaatttattt--tcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||| |||||| | |||| || |||||||||||||||||||||||||    ||||| || |||||  || ||||||||||||| |||||||||    
T  17938210 aataacatgataaacgatcatataatacttcaatcacacttaatttatttaaaaaaaaatatgttatatagtttgtaatttaaaaaagaaaagtaa 17938305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 56427032 - 56427104
Alignment:
Q  255 tcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||||||||||||||| ||||  | ||||||| ||||| ||| |||||||||||||| ||| | |||||||||    
T  56427032 tcaatcacacttaattgatttaaacaaacattctatagtgtccgtaatttaaaaatgcaaaatcagccctccc 56427104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 31348414 - 31348363
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccct 324  Q
    |||| |||||||||| |||| ||| |||||||||||||||||||||| ||||    
T  31348414 ttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccct 31348363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 31348452 - 31348531
Alignment:
Q  254 ttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||| |||||||||||  |||||||| |||||  ||| || ||||||||| ||||||||| ||||||| ||||    
T  31348452 ttcaatcacacataatttattttagaaaaacatgttatatagtccgttatttaaaaaagaaaagtaaaccctcccctccc 31348531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 43961548 - 43961445
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||||| |||| || ||||||||  ||||||||||||||||  |||||||||||| |  ||   |||||||||||  |||||| |||||||||    
T  43961548 aacatgataaatgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttacattgttcataatttaaaaaataaaagtgagccctccc 43961449  T
Q  328 ttcc 331  Q
    ||||    
T  43961448 ttcc 43961445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 45742041 - 45742100
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||| |||||||||| |||| ||| |||||||||||||||||||||| | ||||| ||||    
T  45742041 ttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaactctcccctccc 45742100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 5730935 - 5731017
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaa 309  Q
    ||||| |||||||| |||| || ||||||||| ||||||||||||||||  | |||||| |||||  ||| ||||||||||||    
T  5730935 taacatgataaatgatcatataatacttcaattacacttaatttattttagagaaacatgttatatagtccgtaatttaaaaa 5731017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 27735901 - 27735938
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  27735901 aaaaacattttatagtgtccgtaatttaaaaatgaaaa 27735938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 44784108 - 44784039
Alignment:
Q  251 tacttcaatcacacttaattta-ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||||||||||||||||||||| |||  |||||| | |||||  || ||||||||||||| |||||||||    
T  44784108 tacttcaatcacacttaatttactttagaaaaacctgttatatggtatgtaatttaaaaaagaaaagtaa 44784039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 45132612 - 45132692
Alignment:
Q  234 gataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||||| | |||| || ||||||||||||||||||||||||||     |||| |||||  ||| |||||||||||| |||||||||    
T  45132612 gataaacgatcatataatacttcaatcacacttaatttatttt-----acatattatatagtccgtaatttaaaaaagaaaagtaa 45132692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 54494754 - 54494717
Alignment:
Q  251 tacttcaatcacacttaatttattttcaaaaacatttt 288  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  54494754 tacttcaatcacacttaacttattttaaaaaacatttt 54494717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 27775697 - 27775611
Alignment:
Q  251 tacttcaatcacactt--aatttattttcaaaa--acattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttcccc 333  Q
    ||||||||||||||||  |||||||||| ||||  ||||||||||   || |||||||| ||| ||||||||||||||  |||||||    
T  27775697 tacttcaatcacacttttaatttattttaaaaacaacattttatattatccgtaatttagaaaagaaaagtaagccctttcttcccc 27775611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 41227622 - 41227525
Alignment:
Q  225 aaataacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccct 324  Q
    |||||||  |||||||| |||| || |||||||||||||||||||||  ||| ||  ||||||||||  ||   ||||||||||| || |||||||||||    
T  41227622 aaataacgtgataaatgatcatataatacttcaatcacacttaattt--tttaaatgacattttatattgttcataatttaaaaaagagaagtaagccct 41227525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 45742029 - 45741937
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||| |||||| | |||| || ||||||||||||| ||||||||||||  |||||||  |||||  ||| ||||||||||||  ||||||||    
T  45742029 taacatgataaacgatcatataatacttcaatcacatttaatttattttagaaaaacaagttatatagtccgtaatttaaaaaacaaaagtaa 45741937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 47694487 - 47694383
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaa-atgaaaagtaagccctccc 327  Q
    |||| |||||||| |||| || |||||||| | ||||| ||| |||||  ||| ||||| |||| ||| ||||||||||| |  ||||||||||||||||    
T  47694487 aacatgataaatgatcatataatacttcaaccgcacttgattgattttagaaagcatttcatagtgtccgtaatttaaaagagaaaaagtaagccctccc 47694388  T
Q  328 ttccc 332  Q
     ||||    
T  47694387 ctccc 47694383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 56135894 - 56135834
Alignment:
Q  222 ttgaaataacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaa 282  Q
    ||||| ||||| |||||||| |||| || ||||||||  |||||||||||||||| |||||    
T  56135894 ttgaattaacatgataaatgatcatataatacttcaaaaacacttaatttattttaaaaaa 56135834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 229 - 327
Target Start/End: Original strand, 38198155 - 38198253
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||| ||| |||| || |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  38198155 aacatgatatatgatcatataatacttcaatcacacttaattcattttaaaaaacactttatagtgtctgtaatttaaaaatgaaaagtaagtcctccc 38198253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 171 - 332
Target Start/End: Original strand, 30581856 - 30582023
Alignment:
Q  171 ttttggagggctaagtctatatcttgaaatatgtttgacattttnnnnnnnttgaaata--acacgataaatggtcatttagtacttcaatcacacttaa 268  Q
    |||||||||||||||||||||| |||||||||  |||| ||||        ||||||||  ||| |||||||| |||| || ||||||||||||||||||    
T  30581856 ttttggagggctaagtctatattttgaaatataattgatatttaaaagaaattgaaatacaacatgataaatgatcatataatacttcaatcacacttaa 30581955  T
Q  269 tttattttcaaaaacattttatag----cgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||| |||| ||| ||||| |||||    |||| |||||||||||| ||||||||||||||||| ||||    
T  30581956 tttgttttaaaacacattatatagtgtccgtccgtaatttaaaaaagaaaagtaagccctcccctccc 30582023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 31543184 - 31543282
Alignment:
Q  235 ataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||| |||||| || ||||||||||||||||||||||||||  |||||||| |||||  |||  ||||||||||| ||||||||| ||||||| ||||    
T  31543184 ataaacggtcatataatacttcaatcacacttaatttattttagaaaaacatgttatatggtccataatttaaaaaagaaaagtaaaccctcccctccc 31543282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 11575511 - 11575616
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||| | |||| || ||||| ||||||||||||||||||||  |||||||| |||||   | ||||||||||||||||||||||| ||||||    
T  11575511 taacatgataaacgatcatataatactttaatcacacttaatttattttagaaaaacatgttatataatttgtaatttaaaaatgaaaagtaaaccctcc 11575610  T
Q  327 cttccc 332  Q
    | ||||    
T  11575611 cctccc 11575616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 325
Target Start/End: Original strand, 41103609 - 41103709
Alignment:
Q  226 aataacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccct 324  Q
    ||||||| |||||| | |||| || ||||||||||||||||||||||||||  |||||||| |||||  |  ||||||||||||| ||||||||| ||||    
T  41103609 aataacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagcttgtaatttaaaaaagaaaagtaaaccct 41103708  T
Q  325 c 325  Q
    |    
T  41103709 c 41103709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 16653065 - 16652988
Alignment:
Q  251 tacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||||||||||||||| |||||||||  |||||||| |||||  ||| |||||||||||| ||||||||| |||||||    
T  16653065 tacttcaatcacacttgatttattttataaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaaccctccc 16652988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 42650464 - 42650545
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttcc 331  Q
    ||||||||||||||||||||||||||  |||||||| |||||   || |||||||||||| ||||||||| | |||||||||    
T  42650464 tacttcaatcacacttaatttattttagaaaaacatgttatatattccgtaatttaaaaacgaaaagtaaactctcccttcc 42650545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 322
Target Start/End: Complemental strand, 34552694 - 34552606
Alignment:
Q  234 gataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagcc 322  Q
    |||||||| |||| || ||||||||| || ||||||| ||||| ||||||||| ||||| |||  ||||||||||  ||||||||||||    
T  34552694 gataaatgatcatataatacttcaattacgcttaattaattttaaaaaacattatatagtgtcaataatttaaaagagaaaagtaagcc 34552606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 333
Target Start/End: Original strand, 2481912 - 2481989
Alignment:
Q  254 ttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttcccc 333  Q
    ||||||||||||||||  ||||  ||||||||||||||| ||| | |||||||||| |||| ||||||||||||||||||    
T  2481912 ttcaatcacacttaatg-atttaaaaaaacattttatagtgtcggaaatttaaaaa-gaaaggtaagccctcccttcccc 2481989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 327
Target Start/End: Original strand, 12022249 - 12022348
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||||| |||| || ||||||||  ||||||||||||||||  |||||||||||| |  ||| ||||||||||||  |||||| |||||||||    
T  12022249 aacatgataaatgatcatataatacttcaaaaacacttaatttattttaaaaaaacattttacattgtccgtaatttaaaaaataaaagtgagccctccc 12022348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 24243150 - 24243252
Alignment:
Q  226 aataacacgataaatggtcatttagtacttcaatcacacttaatttattt-tcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccct 324  Q
    ||||||| |||||||| |||| || |||||||||||||||||||| ||||   ||||| || | |||  |||||||||||| ||| | ||||||||||||    
T  24243150 aataacatgataaatgatcatataatacttcaatcacacttaattaatttgaaaaaaagatctcatattgtctgtaatttagaaaaggaaagtaagccct 24243249  T
Q  325 ccc 327  Q
    |||    
T  24243250 ccc 24243252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 30664494 - 30664412
Alignment:
Q  234 gataaatggtcatttagtacttcaatcacacttaattta-ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    |||||| ||| || || |||||||||||||||||||||| |||| |||||||| |||||  ||||| |||||||||| |||||    
T  30664494 gataaacggttatataatacttcaatcacacttaatttatttttgaaaaacatgttataaagtctgcaatttaaaaaagaaaa 30664412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 37032495 - 37032417
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccct 328  Q
    ||||| ||||||||||||||||||||  |||||||| |||||  |||||||||||||||| ||||| ||| | ||||||    
T  37032495 tactttaatcacacttaatttattttaaaaaaacatgttatatagtctgtaatttaaaaaagaaaaataaactctccct 37032417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 3726960 - 3727052
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||| |||||| |||||| || || ||||||||  |||||||||||||  |||||||| |||||  ||||||||| |||||| |||||||||    
T  3726960 taacatgataaacggtcatataatatttcaatcatgcttaatttattttagaaaaacatgttatatagtctgtaatctaaaaaagaaaagtaa 3727052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 1281259 - 1281184
Alignment:
Q  251 tacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctc 325  Q
    |||||||| ||||||| |||||| ||  |||||||| ||||| |||| |||||||||||| ||||||||| |||||    
T  1281259 tacttcaaccacacttgatttatcttagaaaaacatgttatatcgtccgtaatttaaaaaagaaaagtaaaccctc 1281184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 316
Target Start/End: Original strand, 6192392 - 6192476
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaag 316  Q
    |||| |||||||| |||| ||||||||||||| || ||||||| |||| ||||| ||||||||| ||| ||| |||||||||||||||    
T  6192392 aacatgataaatgatcatatagtacttcaatcgca-ttaatttctttt-aaaaatattttatag-gtccgtattttaaaaatgaaaag 6192476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 333
Target Start/End: Original strand, 7503082 - 7503165
Alignment:
Q  251 tacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttcccc 333  Q
    ||||| ||||||||||||||||||||  |||||||| |||||   ||  ||||||||||| ||||||||| ||||||| |||||    
T  7503082 tactttaatcacacttaatttattttagaaaaacatgttatataatccataatttaaaaacgaaaagtaaaccctcccctcccc 7503165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 31543165 - 31543106
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||| |||||||||| ||||  || |||||||||||||||||||||| ||||||| ||||    
T  31543165 tttttaaaaacatttcatagtttccgtaatttaaaaatgaaaagtaaaccctcccctccc 31543106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 310
Target Start/End: Original strand, 37923183 - 37923266
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaat 310  Q
    ||||| |||||||| |||| || || || |||| |||||||||||||||  |||||||| |||||  |||||||||||||||||    
T  37923183 taacatgataaatgatcatataatattttaatcgcacttaatttattttagaaaaacatgttatatagtctgtaatttaaaaat 37923266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 1026954 - 1027043
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagt 317  Q
    ||||| |||||| | |||| || ||||||||||| ||||||||||||||  ||||||| ||||||  ||| |||||||||||| |||||||    
T  1026954 taacatgataaacgatcatataatacttcaatcatacttaatttattttagaaaaaca-tttatatagtccgtaatttaaaaaagaaaagt 1027043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 309
Target Start/End: Complemental strand, 31738562 - 31738480
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatt-ttcaaaaacattttatagcgtctgtaatttaaaaa 309  Q
    ||||| |||||||| |||| || ||||||||| |||||||||||||| |  | |||||| |||||  ||||||||||||||||    
T  31738562 taacatgataaatgatcatataatacttcaattacacttaatttattctagagaaacatgttatatagtctgtaatttaaaaa 31738480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 28083858 - 28083793
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    |||| |||||||||||||||||||||  | |||||| |||||  |||||||||||||||| |||||    
T  28083858 tactccaatcacacttaatttattttagagaaacatgttatattgtctgtaatttaaaaaagaaaa 28083793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 34196465 - 34196513
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||||||  |||||||||||||||| |||||||||||||||||    
T  34196465 aaaatcattttataatgtctgtaatttaaaaa-gaaaagtaagccctccc 34196513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 40990312 - 40990377
Alignment:
Q  251 tacttcaatcacacttaatttattttcaa-aaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    ||||||||||| |||||||||||||| || |||||| |||||  ||| |||||||||||| |||||    
T  40990312 tacttcaatcagacttaatttattttaaagaaacatgttatatagtccgtaatttaaaaaagaaaa 40990377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 7979279 - 7979187
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||| |||||||  |||| || |||||||||  ||||| |||||||||  |||||||| |||||  ||| |||||||||||| |||||||||    
T  7979279 taacatgataaataatcatataatacttcaattgcacttgatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaa 7979187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 332
Target Start/End: Original strand, 8815247 - 8815351
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacactt-aatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||||| | || || ||||||||  |||||| |||||||||  |||||||||||| || ||  ||||||||||||| |||||| | |||||||    
T  8815247 aacatgataaatgattatataatacttcaaaaacactttaatttatttgaaaaaacattttacagtgttcgtaatttaaaaattaaaagtgaaccctccc 8815346  T
Q  328 ttccc 332  Q
     ||||    
T  8815347 ctccc 8815351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 10028225 - 10028157
Alignment:
Q  252 acttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||| |||||||||||||||||  ||||| || |||||  ||| |||||||||||| |||||||||    
T  10028225 acttcaaccacacttaatttattttaaaaaaatatgttatatggtccgtaatttaaaaaagaaaagtaa 10028157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 16653100 - 16653152
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctc 325  Q
    ||||||||||||||| |||  ||| |||||||||||||||||| ||| |||||    
T  16653100 ttttcaaaaacatttcataatgtccgtaatttaaaaatgaaaattaaaccctc 16653152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 20472774 - 20472734
Alignment:
Q  284 attttatagcgtctgtaatttaaaaatgaaaagtaagccct 324  Q
    ||||||||  |||||||||||||||| ||||||||||||||    
T  20472774 attttataatgtctgtaatttaaaaaagaaaagtaagccct 20472734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 30479810 - 30479766
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagt 317  Q
    |||| ||| |||||| |||| ||||||||||||||||||||||||    
T  30479810 ttttaaaagacatttcatagtgtctgtaatttaaaaatgaaaagt 30479766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 36042545 - 36042497
Alignment:
Q  234 gataaatggtcatttagtacttcaatcacacttaatttattttcaaaaa 282  Q
    ||||||||||||| || ||||||||||||  |||||||||||| |||||    
T  36042545 gataaatggtcatataatacttcaatcacttttaatttatttttaaaaa 36042497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 319
Target Start/End: Original strand, 42742416 - 42742503
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||   |||||||||| ||||||||    
T  42742416 aacatgataaatagtcatatagtacttcaatcacacttaatttattttaaaaaacattttatagtgtct---atttaaaaataaaaagtaa 42742503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 27739189 - 27739091
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||||| ||||| | |||||||||||||||||||| ||||| |||||||||||||||  | | ||||||||||  |||||||||||||||||    
T  27739189 aacatgataaatgatcattaaatacttcaatcacacttaattgattttaaaaaacattttatagtatttataatttaaaagagaaaagtaagccctccc 27739091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 40095038 - 40095144
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttattttc--aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctc 325  Q
    ||||| |||||| | |||| || ||||||||||||||||||||||||||   |||||||| |||||  |||||||||||||||| ||||||||| ||||     
T  40095038 taacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaaacatgttatatagtctgtaatttaaaaacgaaaagtaaaccctt 40095137  T
Q  326 ccttccc 332  Q
    |||||||    
T  40095138 ccttccc 40095144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 327
Target Start/End: Complemental strand, 10392011 - 10391911
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||| |||||| || ||||| ||||||| ||||||||||||  |||||||| | |||  ||| |||||||||||||||||||||| ||||||    
T  10392011 taacatgataaacggtcatataatactttaatcacaattaatttattttagaaaaacatgtaatatagtccgtaatttaaaaatgaaaagtaaaccctcc 10391912  T
Q  327 c 327  Q
    |    
T  10391911 c 10391911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 2859060 - 2859142
Alignment:
Q  251 tacttcaatcacacttaattta-ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||||||||||||||||||||| |||| |||||||| |||||  ||| ||||||||||||  |||||||| ||||||| ||||    
T  2859060 tacttcaatcacacttaatttatttttgaaaaacatgttatatagtccgtaatttaaaaaataaaagtaaaccctcccctccc 2859142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 8529915 - 8529838
Alignment:
Q  251 tacttcaatcacacttaatttattttcaaaaa-cattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||||||||||||||||||||||||  ||||| ||| |||||  || ||||||||||||| ||||||||| |||||||    
T  8529915 tacttcaatcacacttaatttatttaaaaaaaacatgttatatagtttgtaatttaaaaaagaaaagtaaaccctccc 8529838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 41676437 - 41676486
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  41676437 aaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctccc 41676486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 49832663 - 49832587
Alignment:
Q  251 tacttcaatcacacttaatttattttcaaaaa-cattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||||||||||||||| |||||||| ||||| || ||||||   ||||||||||||||| ||||||||||| ||||    
T  49832663 tacttcaatcacacttattttatttttaaaaaacactttatattatctgtaatttaaaaaagaaaagtaagctctcc 49832587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 32951446 - 32951528
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||||||||||||||||||  |||||||| || ||  ||| |||||||||||| ||||||||| | ||||| ||||    
T  32951446 tacttcaatcacacttaatttattttagaaaaacatgttctatagtccgtaatttaaaaacgaaaagtaaactctcccctccc 32951528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 51597784 - 51597702
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||||||||||||||||||  |||||||| |||||  ||| || ||||||||| ||||||||| | ||||| ||||    
T  51597784 tacttcaatcacacttaatttattttaaaaaaacatgttatatagtccgtgatttaaaaaagaaaagtaaactctcccctccc 51597702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 38509999 - 38510104
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    |||||||||||| | | || || |||||||||||||||| |||||||||  |||||||| |||||  ||| ||| |||||||| ||||| ||| ||||||    
T  38509999 taacacgataaacgataatataatacttcaatcacacttgatttattttagaaaaacatgttatatagtccgtagtttaaaaaagaaaactaaaccctcc 38510098  T
Q  327 cttccc 332  Q
    | ||||    
T  38510099 cctccc 38510104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 40095020 - 40094972
Alignment:
Q  279 aaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||||||||| |||| ||| |||||||||||||||||||||| |||||||    
T  40095020 aaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctccc 40094972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 45585790 - 45585882
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||| |||||| | |||| ||||||||| |||||||||||||||||||  |||||||| |||||  ||| ||||||| || | |||||||||    
T  45585790 taacatgataaacgatcatatagtacttcgatcacacttaatttattttaaaaaaacatgttatatagtccgtaattttaagaggaaaagtaa 45585882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 332
Target Start/End: Complemental strand, 2859017 - 2858966
Alignment:
Q  281 aacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||| |||| |||||||||||| ||||||||||||| ||||||| ||||    
T  2859017 aacatttcatagggtctgtaatttagaaatgaaaagtaaaccctcccctccc 2858966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 47552883 - 47552953
Alignment:
Q  248 tagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||| |||||| |||||||||| ||||| ||||| |||||||| ||  |||||||| ||||||||||||||    
T  47552883 tagtatttcaattacacttaattaattttaaaaaatattttataccggttgtaattt-aaaatgaaaagtaa 47552953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 12234122 - 12234052
Alignment:
Q  255 tcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccct 324  Q
    |||||||||||| |||||||||  |||||||| |||||  ||| |||||||||||| ||||| ||||||||    
T  12234122 tcaatcacacttgatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaattaagccct 12234052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 30010448 - 30010366
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||||||| |||||||||||||||||  |||||||| |||||  ||| |||||||||| | |||||||||  |||||| ||||    
T  30010448 tacttcaaccacacttaatttattttagaaaaacatgttatatagtccgtaatttaaacaagaaaagtaaatcctcccctccc 30010366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 41498561 - 41498614
Alignment:
Q  279 aaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||| |||| ||| ||||||||||||||||||||||  |||||| ||||    
T  41498561 aaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaatcctcccctccc 41498614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 51582119 - 51582066
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaa 282  Q
    |||| |||||||| |||| || ||||||||||||||| |||||||||| |||||    
T  51582119 aacatgataaatgatcatgtaatacttcaatcacactgaatttatttttaaaaa 51582066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 50744386 - 50744434
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt 276  Q
    ||||| |||||| | |||| || ||||||||||||||||||||||||||    
T  50744386 taacatgataaacgatcatataatacttcaatcacacttaatttatttt 50744434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 326
Target Start/End: Original strand, 51303707 - 51303779
Alignment:
Q  254 ttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||||||||||||||| ||||  ||||||||||||||| ||   |||||| |||| |||||| || ||||||    
T  51303707 ttcaatcacacttaattgatttaaaaaaacattttatagtgttcataattttaaaaagaaaaggaaaccctcc 51303779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 16509396 - 16509322
Alignment:
Q  251 tacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctc 325  Q
    |||||||||||||||| ||||||||| ||||||||||||||| |||| ||||| ||||| |||||||||||||||    
T  16509396 tacttcaatcacacttgatttatttttaaaaacattttatagtgtctttaattcaaaaaagaaaagtaagccctc 16509322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 17842515 - 17842399
Alignment:
Q  234 gataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttcccc 333  Q
    |||||||| ||||  ||||||| |||||| ||||||| |||||||| |||||||||||| ||| | |||||||| | |||| |||||||||||| | |||    
T  17842515 gataaatgatcataaagtacttaaatcacgcttaattcattttcaacaacattttatagggtccgcaatttaaacaagaaatgtaagccctcccct-ccc 17842417  T
Q  334 attcaaacataccctaaa 351  Q
    || |||||||||||||||    
T  17842416 atccaaacataccctaaa 17842399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 10818365 - 10818426
Alignment:
Q  271 tattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||||| |||||||||| |||| ||| |||||||||||||||||||||| ||||||| ||||    
T  10818365 tattttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctccc 10818426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 12811108 - 12811185
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||||||||||||||||||||||||||  |||||||| |||||  |||| ||||||||| | ||||||||| |||||||    
T  12811108 tacttcaatcacacttaatttattttagaaaaacatattatatagtctctaatttaaagaagaaaagtaatccctccc 12811185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 32926790 - 32926737
Alignment:
Q  222 ttgaaataacacgataaatggtcatttagtacttcaatcacacttaatttattt 275  Q
    ||||||||||| |||||||| |||| || |||||||||||||||||||||||||    
T  32926790 ttgaaataacatgataaatgatcatataatacttcaatcacacttaatttattt 32926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 6034201 - 6034269
Alignment:
Q  252 acttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||||||||||||||||||||||||  |||||||| |||||  ||||| |||||||||| |||||||||    
T  6034201 acttcaatcacacttaatttattttagaaaaacatgttatacagtctgcaatttaaaaaagaaaagtaa 6034269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 2893742 - 2893677
Alignment:
Q  255 tcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||||||||||||||||||  |||||||| |||||  ||||||| |||||||| |||||||||    
T  2893742 tcaatcacacttaatttattttagaaaaacatgttatatagtctgtagtttaaaaacgaaaagtaa 2893677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 4097617 - 4097708
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt--caaaaacattttatagcgtctgtaatttaaaaatgaaaagt 317  Q
    ||||| |||||| | |||| || ||||||||||||||||||||||||||   ||||| || |||||  ||| |||||||||||| |||||||    
T  4097617 taacatgataaacgatcatataatacttcaatcacacttaatttattttggaaaaaaaatgttatattgtccgtaatttaaaaaagaaaagt 4097708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 33041585 - 33041521
Alignment:
Q  252 acttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    |||||||||||||||||||||||||  |||||||  |||||  |||| |||||||||||||||||    
T  33041585 acttcaatcacacttaatttattttaaaaaaacacattatatagtctataatttaaaaatgaaaa 33041521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 13583851 - 13583777
Alignment:
Q  235 ataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaa 308  Q
    ||||||| |||| || || |||||||||||||||||||||||  |||||||| |||||   ||||||||||||||    
T  13583851 ataaatgatcatataatatttcaatcacacttaatttattttagaaaaacatgttatataatctgtaatttaaaa 13583777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 319
Target Start/End: Original strand, 16738099 - 16738193
Alignment:
Q  226 aataacacgataaatggtcatttagtacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||| |||| | | |||| || ||||| ||| ||||||| ||||||||  ||||||||||||||   ||||||||||||||| |||||||||    
T  16738099 aataacatgatatacgatcatataatacttaaataacacttactttattttagaaaaacattttatataatctgtaatttaaaaaagaaaagtaa 16738193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 19278127 - 19278081
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||| ||||| ||||||||| ||| ||||||||||||||||||||||    
T  19278127 ttttaaaaaatattttatagtgtcagtaatttaaaaatgaaaagtaa 19278081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 31849226 - 31849144
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||||||||||||||| |||||||||  ||||| || |||||  ||||||| |||||||| ||||| ||| ||||||| ||||    
T  31849226 tacttcaatcacacttgatttattttagaaaaatatgttatatagtctgtagtttaaaaaagaaaactaaaccctcccctccc 31849144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 31849261 - 31849315
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| ||| ||||||||||| ||| |||||||||||||||||||| | |||||||    
T  31849261 ttttaaaagacattttatagtgtccgtaatttaaaaatgaaaagtgaaccctccc 31849315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 12811071 - 12811034
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  12811071 aaaaacatttcatagtgtctgtaatttaaaaatgaaaa 12811034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 14548708 - 14548793
Alignment:
Q  225 aaataacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaa-aacattttatagcgtctgtaatttaaaaa 309  Q
    ||||||||  ||||||| |||| || |  |||||||||| |||||||||||| ||| |||||||||||  ||| ||||||||||||    
T  14548708 aaataacattataaatgatcatataatggttcaatcacagttaatttattttaaaataacattttatattgtccgtaatttaaaaa 14548793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 29019965 - 29020042
Alignment:
Q  255 tcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||||||||| ||||| ||||  ||||||||||||||  |||  || | |||||||||||| |||| |||||||||||    
T  29019965 tcaatcacacataattgatttagaaaaacattttataatgtccttattataaaaatgaaaattaagtcctcccttccc 29020042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 2900067 - 2900107
Alignment:
Q  279 aaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||||| |||| |||| |||||||||||||||||||||    
T  2900067 aaaacatttcatagtgtctataatttaaaaatgaaaagtaa 2900107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 21606931 - 21606883
Alignment:
Q  279 aaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||||||||| ||||  || |||||||||||||||||||||| |||||||    
T  21606931 aaaacatttcatagtttccgtaatttaaaaatgaaaagtaaaccctccc 21606883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 8426976 - 8427081
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||||| |||| || |||||||||| |||||||||||||||  |||||||| ||||| |||||||| |||||||||||||||||| | ||||    
T  8426976 taacatgataaatgatcatataatacttcaatcgcacttaatttattttagaaaaacatgttatatcgtctgtactttaaaaatgaaaagtaaactctcc 8427075  T
Q  327 cttccc 332  Q
    | ||||    
T  8427076 cctccc 8427081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 44966700 - 44966634
Alignment:
Q  249 agtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaag 316  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  44966700 agtacttcattcacacttaatttatttt-aaaaacattttatagtgtctataatttaaaaatgaaaag 44966634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 320
Target Start/End: Complemental strand, 18811473 - 18811375
Alignment:
Q  222 ttgaaataacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaag 320  Q
    ||||||||||| ||||||   |||| || || ||||||||||||||||||||||| ||||||| |||||||   |||||||||||||| ||||||||||    
T  18811473 ttgaaataacatgataaacaatcatataatatttcaatcacacttaatttattttaaaaaacactttatagttactgtaatttaaaaaagaaaagtaag 18811375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 329
Target Start/End: Complemental strand, 887049 - 886955
Alignment:
Q  234 gataaatggtcatttagtacttcaatcacacttaatttattttcaaaaa-cattttatagcgtctgtaatttaaaaatgaaaagtaagccctccctt 329  Q
    |||||||| |||| || |||||||||||||| ||||||||||| ||||| |||||||||  ||  |||||||||||| |||||||||||||||||||    
T  887049 gataaatgatcatataatacttcaatcacacataatttattttaaaaaagcattttatattgt--gtaatttaaaaaagaaaagtaagccctccctt 886955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 14196808 - 14196874
Alignment:
Q  261 acacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||||||| |||||||| ||||||||||||||| ||  |||||||||||| |||||||||||||||||    
T  14196808 acacttagtttattttaaaaaacattttatagtgttcgtaatttaaaaaagaaaagtaagccctccc 14196874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 36347669 - 36347751
Alignment:
Q  251 tacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||||||||||||||||||  |||||||| |||||  ||| |||||||||||| ||||||||| | ||||||||||    
T  36347669 tacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaactctcccttccc 36347751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 14187171 - 14187113
Alignment:
Q  269 tttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||||||||||||||||||||||  || | ||||||||||| |||||||||||||||||    
T  14187171 tttattttcaaaaacattttataatgtttataatttaaaaaagaaaagtaagccctccc 14187113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 21662323 - 21662413
Alignment:
Q  237 aaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||||| |||| || ||||||||||| |||||||| ||||| |||||||||||| || |||| || |||||||  |||||||||| ||||||    
T  21662323 aaatgatcatataatacttcaatcaaacttaattgattttaaaaaacattttacagtgtctatactttaaaagagaaaagtaaggcctccc 21662413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 12541905 - 12541813
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt--caaaaacattttatagcgtctgtaatttaaaaatgaaaagta 318  Q
    ||||| |||||| | |||| ||||||||||||| |||||||||||||||   ||||| ||||||||  ||| |||||||||||| ||||||||    
T  12541905 taacatgataaacgatcatatagtacttcaatcgcacttaatttattttagaaaaaatattttatatagtccgtaatttaaaaaagaaaagta 12541813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 15224799 - 15224904
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatt-ttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||||| |||| || |||||||||||||||||||||||| |  |||||||| |||||  | | |||||||||||| ||||||||| || |||    
T  15224799 taacatgataaatgatcatataatacttcaatcacacttaatttattctagaaaaacatgttatatagcccgtaatttaaaaaagaaaagtaaaccatcc 15224898  T
Q  327 cttccc 332  Q
    | ||||    
T  15224899 cctccc 15224904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 332
Target Start/End: Complemental strand, 41778908 - 41778807
Alignment:
Q  232 acgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttc 330  Q
    |||||||||| |||| || ||||||||||||||||||||||||||  ||||||||||||||  |||  |||||||||    |||||||| ||||||| ||    
T  41778908 acgataaatgatcatataatacttcaatcacacttaatttattttaaaaaaacattttatactgtccataatttaaagtacaaaagtaaaccctcccctc 41778809  T
Q  331 cc 332  Q
    ||    
T  41778808 cc 41778807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 887260 - 887320
Alignment:
Q  272 attttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||| |||||||||||||||| || |||||||||||| ||||||||||| ||||| ||||    
T  887260 atttttaaaaacattttatagcatccgtaatttaaaaaagaaaagtaagcgctcccctccc 887320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 327
Target Start/End: Complemental strand, 39821808 - 39821708
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||||| || | || ||||| |||| |||||||||||||||  |||||||| ||||||  ||  ||||||||||||||||||||| ||||||    
T  39821808 taacatgataaatgatcttataatacttaaatcgcacttaatttattttagaaaaacatgttatagaatccataatttaaaaatgaaaagtaaaccctcc 39821709  T
Q  327 c 327  Q
    |    
T  39821708 c 39821708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 332
Target Start/End: Original strand, 40022529 - 40022583
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||||||||| |||| ||||||||||||||||||||| |||| ||||||| ||||    
T  40022529 aaaaacatttcatagtgtctgtaatttaaaaatgaaatgtaaaccctcccctccc 40022583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 31086638 - 31086553
Alignment:
Q  234 gataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||||||| |||| || ||||||||||||||||| || ||||| |||||||||||| |   | ||||||||||||  |||||||||    
T  31086638 gataaatgttcatatactacttcaatcacacttagttgattttaaaaaacattttaaaatatatgtaatttaaaagagaaaagtaa 31086553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 31928147 - 31928259
Alignment:
Q  226 aataacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaa------acattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||| |||||||| |||| || ||||||||  |||||||||||||||  ||||      |||||||| |  || |||||||||||||| |||||| |    
T  31928147 aataacatgataaatgatcatataatacttcaaaaacacttaatttatttaaaaaaaaaaaaacattttacattgtttgtaatttaaaaattaaaagtga 31928246  T
Q  320 gccctcccttccc 332  Q
    |||||||||||||    
T  31928247 gccctcccttccc 31928259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 14196730 - 14196774
Alignment:
Q  158 tttgggaagaggtttttggagggctaagtctatatcttgaaatat 202  Q
    ||||||| | || ||||||||||||||||||||||||||||||||    
T  14196730 tttgggaggggggttttggagggctaagtctatatcttgaaatat 14196774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 19566932 - 19567008
Alignment:
Q  234 gataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaa 309  Q
    |||||| |||| | || ||||||||||||||||||||||||||  |||||||| |||||  ||| ||||||||||||    
T  19566932 gataaacggtcgtataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaa 19567008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 8426972 - 8426913
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||| |||||||||| |||| |||  |||||||||||| |||||||| ||||||||||||    
T  8426972 ttttaaaaaacatttcatagtgtccttaatttaaaaattaaaagtaaaccctcccttccc 8426913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 1583228 - 1583282
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||||||| |||| ||| |||||||||||||||||||| | |||||||    
T  1583228 ttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtgaaccctccc 1583282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 15224787 - 15224741
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||| |||||||||| |||| ||| ||||||||||||||||||||||    
T  15224787 ttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaa 15224741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 315
Target Start/End: Original strand, 37739996 - 37740085
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt--caaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    ||||| |||||| | |||| || ||||||||||||||||||||||||||   |||||||| |||||   |||| |||||||||| |||||    
T  37739996 taacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaaacatgttatataatctggaatttaaaaaagaaaa 37740085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 887165 - 887210
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagta 318  Q
    |||| |||||||||||| |||||| |||||||||||| ||||||||    
T  887165 ttttaaaaaacattttacagcgtccgtaatttaaaaaagaaaagta 887210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 9313143 - 9313188
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccc 323  Q
    |||| |||||||||  |||||||||||||||| |||||||||||||    
T  9313143 aaaatcattttataatgtctgtaatttaaaaaggaaaagtaagccc 9313188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 9427142 - 9427179
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  9427142 aaaaacattttatagtgtccgtaatttaaaaatgaaaa 9427179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 21502171 - 21502118
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaa 282  Q
    |||| ||||||||||||| || ||||||||  |||||||||||||||| |||||    
T  21502171 aacaagataaatggtcatataatacttcaaaaacacttaatttatttttaaaaa 21502118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 23748211 - 23748134
Alignment:
Q  251 tacttcaatcacacttaattta-ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||||||||||||||| ||||| |||| |||||||| |||||  ||| ||| |||||||| ||||| ||| |||||||    
T  23748211 tacttcaatcacacttgatttatttttgaaaaacatgttatatagtccgtagtttaaaaaagaaaactaaaccctccc 23748134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 333
Target Start/End: Original strand, 31795875 - 31795980
Alignment:
Q  229 aacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaa-cattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||| | |||| || |||||||||||||||||||||||||| ||||| ||| ||||    || || ||||| ||| ||||| ||| |||||||    
T  31795875 aacatgataaacgatcatataatacttcaatcacacttaatttattttaaaaaaacatgttatttactccgtgatttagaaaagaaaattaatccctccc 31795974  T
Q  328 ttcccc 333  Q
    ||||||    
T  31795975 ttcccc 31795980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 40022486 - 40022445
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttata 291  Q
    |||||||||||||||||||||||||| ||||||||| |||||    
T  40022486 tacttcaatcacacttaatttattttacaaaaacatgttata 40022445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 19566908 - 19566860
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    |||||||||| |||| ||||||||||||||| ||| |||||| ||||||    
T  19566908 aaaaacatttcatagtgtctgtaatttaaaactgagaagtaaaccctcc 19566860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 39732834 - 39732925
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||| |||||| | |||| || ||||||||||| ||||||||||||||  ||||||| | ||||  ||| |||||||||||| |||||||||    
T  39732834 taacatgataaacgatcatataatacttcaatcatacttaatttattttagaaaaaca-tgtatatagtccgtaatttaaaaacgaaaagtaa 39732925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 333
Target Start/End: Complemental strand, 20409777 - 20409693
Alignment:
Q  249 agtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttcccc 333  Q
    ||||||| |||||||||||||| |||||||| |||||||||||| ||| | | |||||| | ||||||||||||||||| |||||    
T  20409777 agtacttaaatcacacttaattcattttcaacaacattttatagggtccgcactttaaacaagaaaagtaagccctcccctcccc 20409693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 10650545 - 10650463
Alignment:
Q  251 tacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||||||||||||||||||  |||||||||| |||| ||| ||||||||||||| ||||||||  |||||| ||||    
T  10650545 tacttcaatcacacttaatttattttagaaaaacatttcatagtgtccgtaatttaaaaataaaaagtaaatcctcccctccc 10650463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 10072752 - 10072844
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||| |||||| | |||| || ||||||||||| ||||||||||||||  |||||||| ||||| |||| |||||||||||| |||||||||    
T  10072752 taacatgataaacgatcatataatacttcaatcatacttaatttattttagaaaaacatgttataccgtcggtaatttaaaaaagaaaagtaa 10072844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 1657964 - 1658023
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||| ||||||| ||||    
T  1657964 ttttaaaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctccc 1658023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 4373671 - 4373763
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaattta-ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||| |||||||| |||| || || ||||||||||||||||||| |||| |||||| | |||||  ||| |||||||||||| |||||||||    
T  4373671 taacatgataaatgatcatataatatttcaatcacacttaatttatttttaaaaaacttgttatatagtccgtaatttaaaaaagaaaagtaa 4373763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 37551546 - 37551455
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||| |||||| | |||| || |||||||||||||| ||||||||||| |||||  |||||||  |||  ||||||||||| |||||||||    
T  37551546 taacatgataaacgatcatataatacttcaatcacacataatttatttttaaaaaacttttatatagtccataatttaaaaacgaaaagtaa 37551455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 37654376 - 37654285
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||| |||||| | |||| || |||||||||||||| ||||||||||| |||||  |||||||  |||  ||||||||||| |||||||||    
T  37654376 taacatgataaacgatcatataatacttcaatcacacataatttatttttaaaaaacttttatatagtccataatttaaaaacgaaaagtaa 37654285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 7544252 - 7544170
Alignment:
Q  251 tacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||||||||||||||| |||||||||  |||||||| |||||  ||| |||||||||||| ||||| | ||||||||| ||||    
T  7544252 tacttcaatcacacttgatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaatttagccctcccctccc 7544170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 26415009 - 26414927
Alignment:
Q  251 tacttcaatcacacttaatttattttc-aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||||||||||| ||||||  |||||||| | |||  ||| |||||||||||| ||||||||| ||||||| ||||    
T  26415009 tacttcaatcacacttaatatattttagaaaaacatgtcatatagtccgtaatttaaaaacgaaaagtaaaccctcccctccc 26414927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 2550440 - 2550391
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||||||| | |||| |||||||||||||||||||||||||| |||||||    
T  2550440 aaaaacatatcatagtgtctgtaatttaaaaatgaaaagtaaaccctccc 2550391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 13634850 - 13634745
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||| | |||| || || ||||||||||| |||||||||||  |||||||| |||||  ||| || ||||||||| ||||||||| ||||||    
T  13634850 taacatgataaacgatcatataataattcaatcacacataatttattttagaaaaacatgttatatagtccgttatttaaaaaagaaaagtaaaccctcc 13634751  T
Q  327 cttccc 332  Q
    | ||||    
T  13634750 cctccc 13634745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 14874149 - 14874079
Alignment:
Q  254 ttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||||||||||||| ||  ||| |||||||||||||||| ||  ||||||| ||| ||||||||||||||||    
T  14874149 ttcaatcacacttaactt--tttaaaaaacattttatagcttccttaatttagaaaagaaaagtaagccctcc 14874079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 40305747 - 40305698
Alignment:
Q  284 attttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttcccc 333  Q
    ||||||||  |||||||||||||||| ||||| |||||||||||||||||    
T  40305747 attttataatgtctgtaatttaaaaaagaaaactaagccctcccttcccc 40305698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 28279581 - 28279680
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt--caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctc 325  Q
    ||||| |||||||| |||| || ||||||||||||||||| ||||||||   |||||||| |||||   ||  ||||||||||| ||||||||| |||||    
T  28279581 taacatgataaatgatcatataatacttcaatcacacttagtttattttagaaaaaacatgttatatattccataatttaaaaaggaaaagtaaaccctc 28279680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 36392237 - 36392197
Alignment:
Q  279 aaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  36392237 aaaacatttcatagtgtctgtaatttaaaaatgaaaagtaa 36392197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 13298382 - 13298299
Alignment:
Q  251 tacttcaatcacacttaatttat-tttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttcccc 333  Q
    ||||| ||||||||||||||||| || ||||||| |||||||  ||| | |||||||||| ||||||||||  ||||| |||||    
T  13298382 tacttaaatcacacttaatttatattgcaaaaacgttttatattgtccgcaatttaaaaaagaaaagtaagttctcccctcccc 13298299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 13634862 - 13634921
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    |||| |||||||||| |||| ||  |||||||||||||||||||||| ||||||| ||||    
T  13634862 ttttaaaaaacatttcatagtgttcgtaatttaaaaatgaaaagtaacccctcccctccc 13634921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 333
Target Start/End: Original strand, 20147051 - 20147086
Alignment:
Q  298 gtaatttaaaaatgaaaagtaagccctcccttcccc 333  Q
    |||||||||||||||||||||| |||||||||||||    
T  20147051 gtaatttaaaaatgaaaagtaaaccctcccttcccc 20147086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 20513538 - 20513492
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||| |||||||||| |||| ||||||| ||||||||||||||||||    
T  20513538 ttttaaaaaacatttcatagtgtctgtagtttaaaaatgaaaagtaa 20513492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 36392255 - 36392341
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaa 314  Q
    ||||| |||||| | |||| || ||||||||||||||||||| ||||||  |||| || |||||  ||| |||||||||||| ||||    
T  36392255 taacatgataaacgatcatataatacttcaatcacacttaatctattttagaaaatatattatatagtccgtaatttaaaaacgaaa 36392341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 319
Target Start/End: Original strand, 2556120 - 2556213
Alignment:
Q  226 aataacacgataaatggtcatttagtacttcaatcacacttaatttattttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||| |||||||| |||| ||  |||  | ||||||| || ||||||| ||||| |||||||| | ||  |||||||||||||||||||||    
T  2556120 aataacatgataaatgatcatataaaactctagtcacactcaacttattttaaaaaatattttatatcatccataatttaaaaatgaaaagtaa 2556213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 326
Target Start/End: Original strand, 14684613 - 14684688
Alignment:
Q  254 ttcaatcacacttaatttattt---tcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||||||||||||||||||||     ||||||||||||||  | | |||||| ||||| ||||||||||||||||    
T  14684613 ttcaatcacacttaatttatttaaaaaaaaaacattttatattgcccgtaattaaaaaaagaaaagtaagccctcc 14684688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 16938618 - 16938513
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcc 326  Q
    ||||| |||||||| |||| || || |||||||||||||||||||||||  | |||||| |||||  ||| |||| ||||||| |||||  || ||||||    
T  16938618 taacatgataaatgatcatataatatttcaatcacacttaatttattttagagaaacatgttatatagtccgtaacttaaaaaagaaaaacaaaccctcc 16938519  T
Q  327 cttccc 332  Q
    | ||||    
T  16938518 cctccc 16938513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 29002294 - 29002245
Alignment:
Q  278 aaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||||||||||||||| ||   ||||||||||||||||||||| |||||||    
T  29002294 aaaaacattttatagtgttcataatttaaaaatgaaaagtaaaccctccc 29002245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 315
Target Start/End: Complemental strand, 14681608 - 14681520
Alignment:
Q  228 taacacgataaatggtcatttagtacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaa 315  Q
    ||||| ||||||  ||||| || | ||||||||||| ||||||||||||  |||||||| |||||   ||||||||||||||| |||||    
T  14681608 taacatgataaacagtcatatattccttcaatcacatttaatttattttaaaaaaacatgttatataatctgtaatttaaaaaagaaaa 14681520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 26415050 - 26415090
Alignment:
Q  279 aaaacattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    ||||||||| |||| |||||||| |||||||||||||||||    
T  26415050 aaaacatttcatagtgtctgtaacttaaaaatgaaaagtaa 26415090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 39320 - 39400
Alignment:
Q  253 cttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||||||||||||||||  |||||||| ||| |  ||| |||||||||||| ||||||||| ||||||| ||||    
T  39320 cttcaatcacacttaatttattttagaaaaacatgttacatagtccgtaatttaaaaaagaaaagtaaaccctcccctccc 39400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 39280 - 39226
Alignment:
Q  273 ttttcaaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    |||| |||||||||| |||| ||| |||||||||||||||||||||| |||||||    
T  39280 ttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctccc 39226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 6700 - 6618
Alignment:
Q  251 tacttcaatcacacttaatttattttcaaa-aacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||||||| ||||||||||  || ||||  |||||  |||||||||||||||| ||||||||| ||||||| ||||    
T  6700 tacttcaatcacactaaatttattttagaataacaagttatatagtctgtaatttaaaaaagaaaagtaaaccctcccctccc 6618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 16066 - 15997
Alignment:
Q  251 tacttcaatcacacttaatttattttcaaaaa-cattttatagcgtctgtaatttaaaaatgaaaagtaa 319  Q
    |||||||||||||| |||||| |||| ||||| ||| |||||  |||||||||||||||| |||||||||    
T  16066 tacttcaatcacacataattttttttaaaaaaacatgttatatagtctgtaatttaaaaaagaaaagtaa 15997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 3236 - 3181
Alignment:
Q  277 caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctcccttccc 332  Q
    ||||||||||| |||| |||||||||||||||| ||||||||| | ||||| ||||    
T  3236 caaaaacatttcatagtgtctgtaatttaaaaaagaaaagtaaactctcccctccc 3181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 16424 - 16501
Alignment:
Q  251 tacttcaatcacacttaatttatttt-caaaaacattttatagcgtctgtaatttaaaaatgaaaagtaagccctccc 327  Q
    ||||||||||||||||||||||||||  | |||||| |||||  ||| || | ||||||| ||||||||| |||||||    
T  16424 tacttcaatcacacttaatttattttagacaaacatgttatatagtccgtgagttaaaaacgaaaagtaaaccctccc 16501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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