View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17254_low_6 (Length: 352)
Name: NF17254_low_6
Description: NF17254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17254_low_6 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 169954 - 170277
Alignment:
| Q |
11 |
cacagacatcaactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
169954 |
cacagacatcaactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttct |
170053 |
T |
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| Q |
111 |
ttctatttatctcctcttttatgtaactgtcatgattctagccttctgatgcaagtttcattgatagtctaactttacgatgtcatggtttcatgattgc |
210 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
170054 |
ttctatttatctcatcttttatgtaactgtcatgattctagccttctgatgcaagtttcattgatattctaactttacgatgtcatggtttcatgattgc |
170153 |
T |
|
| Q |
211 |
tgatgaatatgtaagatattatgaccaaagttcattcataagaacaaaatggtggcagacaaggatgaaactggatccatataatagaactgcaagggtt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
170154 |
tgatgaatatgtaagatattatgaccaaagttcattcataagaacaaaatggtggcagagaaggatgaaactggatccatataatagaactgaaagggtt |
170253 |
T |
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| Q |
311 |
gcagagaaactagcatacactcta |
334 |
Q |
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|||||||||||||||||||||||| |
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| T |
170254 |
gcagagaaactagcatacactcta |
170277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 31053295 - 31052972
Alignment:
| Q |
11 |
cacagacatcaactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31053295 |
cacagacatcaactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttct |
31053196 |
T |
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| Q |
111 |
ttctatttatctcctcttttatgtaactgtcatgattctagccttctgatgcaagtttcattgatagtctaactttacgatgtcatggtttcatgattgc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31053195 |
ttctatttatctcctcttttatgtaactgtcatgattctagccttctgatgcaagtctcattgatattctaactttacgatgtcatggtttcatgattgc |
31053096 |
T |
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| Q |
211 |
tgatgaatatgtaagatattatgaccaaagttcattcataagaacaaaatggtggcagacaaggatgaaactggatccatataatagaactgcaagggtt |
310 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
31053095 |
tgatcaatatgtaagatattatgaccaaaattcattcataagaacaaaatggtggcagagaaggatgaaactggatccatataatagaactgaaagggtt |
31052996 |
T |
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| Q |
311 |
gcagagaaactagcatacactcta |
334 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
31052995 |
gcagagaaactagcatacactcta |
31052972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 280
Target Start/End: Complemental strand, 5380313 - 5380121
Alignment:
| Q |
94 |
agagatatatattttctttctatttatctcctcttttatgtaactgtcat-gattctagccttctgatgcaagtttcattgatagtctaactttacgatg |
192 |
Q |
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|||| ||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||| | || |
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| T |
5380313 |
agaggtatatattttcttgctatttatctcctctgt---gtaactgtcattgattctagccttctggtgcaagtttgattgatattctaactttatgttg |
5380217 |
T |
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| Q |
193 |
tcatggtttcatgattgctgat----gaat--atgta--agatattatgaccaaagttcattcataagaacaaaatggtggcagacaaggatgaaa |
280 |
Q |
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| T |
5380216 |
ttatggtttcatgattcgtgattcaaaaatccatgtatgacataatatgaccaaagttcattcataagaacaagatgttagcagagaaggatgaaa |
5380121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 280
Target Start/End: Original strand, 5345212 - 5345344
Alignment:
| Q |
151 |
gccttctgatgcaagtttcattgatagtctaactttacgatgtcatggtttcatgat---tgctgatgaatatgtaagatattatgaccaaagttcattc |
247 |
Q |
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|||||||||||||||||| ||||||| |||||||| | | ||||||||||||||||| || | | ||||||||| ||| ||||||||||||||||| |
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| T |
5345212 |
gccttctgatgcaagtttgattgatattctaacttaatgttgtcatggtttcatgatccgtgattaaaaatatgtaacataacatgaccaaagttcattc |
5345311 |
T |
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| Q |
248 |
ataagaacaaaatggtggcagacaaggatgaaa |
280 |
Q |
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| T |
5345312 |
ataagaaataaatggtagcagagaaggatgaaa |
5345344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 293
Target Start/End: Complemental strand, 5364313 - 5364166
Alignment:
| Q |
151 |
gccttctgatgcaagtttcattgatagtctaactttacgatgtca---tggtttcatgattgctgat---gaatatgtaagatattatgaccaaagttca |
244 |
Q |
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|||||||||||||||||| ||||||| |||||||||| | ||||| ||||||||||||| |||| ||||||||| ||| ||| | ||||||||| |
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| T |
5364313 |
gccttctgatgcaagtttgattgatattctaactttatgttgtcatggtggtttcatgattcgtgattaaaaatatgtaacataatat-aacaaagttca |
5364215 |
T |
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| Q |
245 |
ttcataagaacaaaatggtggcagacaaggatgaaactggatccatata |
293 |
Q |
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|| ||||||||||||| || ||||| |||||||||| || || |||||| |
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| T |
5364214 |
tttataagaacaaaattgtagcagaaaaggatgaaattgaattcatata |
5364166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 6481 - 6428
Alignment:
| Q |
30 |
ataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaa |
83 |
Q |
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|||||| |||||| ||||||||||| ||| |||||| ||||| ||||||||||| |
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| T |
6481 |
ataagaagtaccaatgcttgcatcagaatcatttcattgtaggttagtagctaa |
6428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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