View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17254_low_9 (Length: 250)
Name: NF17254_low_9
Description: NF17254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17254_low_9 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 35791563 - 35791323
Alignment:
| Q |
10 |
gaagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttc |
109 |
Q |
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| T |
35791563 |
gaagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttc |
35791464 |
T |
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| Q |
110 |
tacatggagaaacacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattac |
209 |
Q |
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| T |
35791463 |
tacatggagaaacacctccttctacaaaataataataattcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattac |
35791364 |
T |
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| Q |
210 |
atagcaatagctaatagtctaatcatgtctaatatgacaag |
250 |
Q |
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| T |
35791363 |
atagcaatagctaatagtctaatcatgtctaatatgacaag |
35791323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 35782191 - 35782078
Alignment:
| Q |
122 |
cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct |
221 |
Q |
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| T |
35782191 |
cacctccttctacaaaataataat---tcgaataactaatcatattgagtacatgttatgtgaccccatatgaaaattttgctattacatagcaataact |
35782095 |
T |
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| Q |
222 |
aatagtctaatcatgtc |
238 |
Q |
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| T |
35782094 |
aatagtctgatcatgtc |
35782078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 35782280 - 35782183
Alignment:
| Q |
10 |
gaagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctt |
107 |
Q |
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| T |
35782280 |
gaagaataccaaaggcttacgtttgcaacatttagaggagcaggtcatgcagttccatgtttcaaaccaagcaactcacttgtgtttttcacctcctt |
35782183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 35785071 - 35784976
Alignment:
| Q |
122 |
cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct |
221 |
Q |
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| T |
35785071 |
cacctccttctacaaaataat------tcgaataattaattatattggatacatgttacgtgactcgatatgaaaatttagctattacataccaatagct |
35784978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 3334970 - 3335090
Alignment:
| Q |
11 |
aagaatatcaagggcttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttct |
110 |
Q |
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|||||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| || |||||| ||||||| |
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| T |
3334970 |
aagaatatgaaggacttacgtttgctacatttagaggagctggtcatgcagtgccctgttttaaaccaagcaattcacttaaattcttcaccacctttct |
3335069 |
T |
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| Q |
111 |
acatggagaaacacctccttc |
131 |
Q |
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| T |
3335070 |
tcttggagaatcaccaccttc |
3335090 |
T |
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