View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17255_high_12 (Length: 355)
Name: NF17255_high_12
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 27100668 - 27100521
Alignment:
| Q |
7 |
tagattatactgactttttgttttagtatttagtttgttgttgtaattatgctgacaatattgcaagccttataatagagcaaattgggtgtagtttgtg |
106 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27100668 |
tagattatactgactttatattttagtatttaggttgttgttgtaattatgctgacagtattgcaagccttataatagaacaaattgggtgtagtttgtg |
27100569 |
T |
|
| Q |
107 |
ctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccg |
154 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27100568 |
ctggtcgtataaattcgtggggaaagagcgtcgtgctaaatagcaccg |
27100521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 27177635 - 27177782
Alignment:
| Q |
7 |
tagattatactgactttttgttttagtatttagtttgttgttgtaattatgctgacaatattgcaagccttataatagagcaaattgggtgtagtttgtg |
106 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27177635 |
tagattatactgactttatattttagtatttaggttgttgttgtaattatgctgacagtattgcaagccttataatagaacaaattgggtgtagtttgtg |
27177734 |
T |
|
| Q |
107 |
ctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccg |
154 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27177735 |
ctggtcgtataaattcgtggggaaagagcgtcgtgctaaatagcaccg |
27177782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 1877510 - 1877375
Alignment:
| Q |
7 |
tagattatactgactttttgttttagtatttagtttgttgttgtaattatgctgacaatattgcaagccttataatagagcaaattgggtgtagtttgtg |
106 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||||||| || ||||||||||| | ||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
1877510 |
tagactatacttactttttgttttaccgtttagtttgttgttttatttatgctgacagttatgcaagcctaaaaaaagagcaaattgggtgtagtttgtg |
1877411 |
T |
|
| Q |
107 |
ctggtcgtacaaatttgtggggaaagagcgtcgtgc |
142 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1877410 |
ctggtcgtacaaattcgtggggaaagagcgtcgtgc |
1877375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 21522454 - 21522303
Alignment:
| Q |
7 |
tagattatactgactttttgttttagtatttagtttgttgttgtaattatgctgacaatattgcaagccttataatagagcaaattgggtgtagtttgtg |
106 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||| |||||||| ||||||||||| | ||||| ||| | || |||||||||| ||||||||||||| |
|
|
| T |
21522454 |
tagactatacttactttttgttttagcgtttagttttttgttgtatttatgctgacagttatgcaaacctaaaaaaagagcaaattaggtgtagtttgtg |
21522355 |
T |
|
| Q |
107 |
ctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccgctct |
158 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21522354 |
ctggtcgtacaaattcgtggggaaagagcgtcgtgccaaatagcaccgctct |
21522303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 37501990 - 37502070
Alignment:
| Q |
79 |
taatagagcaaattgggtgtag--tttgtgctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccgctc |
157 |
Q |
| |
|
|||||||| |||||| |||||| ||| |||| ||||| || ||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
37501990 |
taatagagaaaattgtgtgtagattttttgctagtcgtgcagattcgtggggaaagagcgtcgtgctatatagcaccgctc |
37502070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 3443973 - 3444056
Alignment:
| Q |
79 |
taatagagcaaattgggtgtag--tttgtgctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccgctctat |
160 |
Q |
| |
|
|||||||||||||| || ||| ||| |||| ||||| || ||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3443973 |
taatagagcaaattatgtatagattttatgctagtcgtgcagattcgtggggaaagagcgtcgtgctatatagcaccgctctat |
3444056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 32827224 - 32827078
Alignment:
| Q |
12 |
tatactgactttttgttttagtatttagtttgttgttgtaattatgctgacaatattgcaagcct-tataatagagcaaattgggtgtagtttgtgctgg |
110 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| ||||||||||| | |||||| || | || |||||||||||||||||||||||||||| |
|
|
| T |
32827224 |
tatacttactttttgttttagcgtttagtttgttgttgtatttatgctgacagttatgcaagtctaaaaaaaagagcaaattgggtgtagtttgtgctgg |
32827125 |
T |
|
| Q |
111 |
tcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccgctc |
157 |
Q |
| |
|
||| ||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
32827124 |
tcggacaaattcatggggaaagagcgtcgtgtcaaatagcaccgctc |
32827078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 39300026 - 39299936
Alignment:
| Q |
169 |
ttaatacaatatgatatagtaataaaaa-tcattt-atgttgattgagtctaatatactctcatgagatgtcataaaaaagagaatataaa |
257 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| |||||| | |||||||||||||||||||| |||| || |||||||||||||||| |
|
|
| T |
39300026 |
ttaatacaatatgatacagtaaaaaaaaatcattttatgttgttctagtctaatatactctcatgaaatgtgatgaaaaagagaatataaa |
39299936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 24908128 - 24908210
Alignment:
| Q |
79 |
taatagagcaaattgggtgtag--tttgtgctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccgctcta |
159 |
Q |
| |
|
||||||||||||||| |||||| ||| |||| ||||| || ||| |||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
24908128 |
taatagagcaaattgtgtgtagattttatgctagtcgtgcagattcgtggggaaagagcgccgtgctatatagcaccgctcta |
24908210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 24908209 - 24908287
Alignment:
| Q |
82 |
tagagcaaattgggtgtag--tttgtgctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccgctct |
158 |
Q |
| |
|
|||||||||||| |||||| ||| |||| ||||| || ||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24908209 |
tagagcaaattgtgtgtagattttatgctagtcgtgcagattcgtggggaaagagcgtcgtgctatatagcaccgctct |
24908287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 18553888 - 18553818
Alignment:
| Q |
88 |
aaattgggtgtagtttgtgctggtcgtacaaatttgtgggg-aaagagcgtcgtgctaaatagcaccgctc |
157 |
Q |
| |
|
|||||| |||| |||||||| ||| |||||||| |||||| |||| ||||||||||| |||||||||||| |
|
|
| T |
18553888 |
aaattgtgtgttgtttgtgcctgtcttacaaattcgtgggggaaagggcgtcgtgctatatagcaccgctc |
18553818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 10215294 - 10215366
Alignment:
| Q |
81 |
atagagcaaattgggtgtagtttgtgctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcacc |
153 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||| ||||||| | ||| ||||||||||||| | |||||||| |
|
|
| T |
10215294 |
atagagcaaattgtgtgtagtttatgctaatcgtgcaaatttatagggtaagagcgtcgtgccatatagcacc |
10215366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University