View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17255_high_17 (Length: 319)
Name: NF17255_high_17
Description: NF17255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17255_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 36150862 - 36151144
Alignment:
| Q |
14 |
catcatctccatcaccacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccact |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36150862 |
catcatctccatcaccacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccact |
36150961 |
T |
|
| Q |
114 |
tgttccaacaacaccaactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttc |
213 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36150962 |
tgttccaacaacaccagctggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttc |
36151061 |
T |
|
| Q |
214 |
tccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcacagctggtatcatcgccatcaggttccgg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36151062 |
tccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccgg |
36151144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 36154248 - 36154532
Alignment:
| Q |
14 |
catcatctccatcaccacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccact |
113 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |
|
|
| T |
36154248 |
catcatcaccctcaccacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagcaccatcaccaggattaagtacagttccgct |
36154347 |
T |
|
| Q |
114 |
tgttccaacaacaccaactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154348 |
tgttccaacaacaccaactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttc |
36154447 |
T |
|
| Q |
214 |
tccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcacagctggtatcatcgccatcaggttccggag |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36154448 |
tccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccggag |
36154532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 5273544 - 5273616
Alignment:
| Q |
197 |
aaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcaca |
269 |
Q |
| |
|
||||||| ||||| ||||| ||||| || ||||||||||||||||| || ||||| || |||||||||||||| |
|
|
| T |
5273544 |
aaaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcaca |
5273616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University